Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04851 ATGGAAGAAGTAAGTGATTGTTGTTCAACAATAATAAGAAACATAGGAAACAAAAACAACACCACCCAAGAAAAACATCACAAACAAAAACAAGAGAAACCATACAGAGGAATAAGAAAAAGAAAGTGGGGTAAGTGGGTAGCAGAAATAAGAGAACCTAACAAAAGATCAAGAATCTGGTTAGGTTCTTATACTACTCCGGTAGCCGCGGCTCGTGCCTACGACACCGCGGTATTTTATCTAAGAGGTCCTACGGCGCGTCTTAATTTCCCCGAATTATTGTTCCAAGACGACGAAGAACACATCAACGACGATTCTATTCAACAAGGTAATATGTCTGCTGATTTAATACGTAAAAAAGCTACTAAAGTCGGTGCTAGAGTTGATGCTCTTCAAACAGCTATTCAAGCTTCATCAATTTCCACTTCTGCTCAATTTAAACCAGATTTAAATGAGTTTCCAGAACCTGAAGATTATTAA 480 0.3792 MEEVSDCCSTIIRNIGNKNNTTQEKHHKQKQEKPYRGIRKRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPTARLNFPELLFQDDEEHINDDSIQQGNMSADLIRKKATKVGARVDALQTAIQASSISTSAQFKPDLNEFPEPEDY 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04851 159 FunFam Ethylene-responsive transcription factor 2 33 92 - -
Trre5g04851 159 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Trre5g04851 159 SUPERFAMILY DNA-binding domain 34 92 IPR016177 GO:0003677
Trre5g04851 159 CDD AP2 35 93 IPR001471 GO:0003700|GO:0006355
Trre5g04851 159 Gene3D AP2/ERF domain 34 92 IPR036955 GO:0003700|GO:0006355
Trre5g04851 159 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 18 158 - -
Trre5g04851 159 Pfam AP2 domain 35 83 IPR001471 GO:0003700|GO:0006355
Trre5g04851 159 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Trre5g04851 159 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Trre5g04851 159 PRINTS Ethylene responsive element binding protein signature 73 93 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04851 Trre-Chr5 50347165 50347644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04851 33 143 AP2-EREBP Transcription Factor Family AT1G46768 69.369 1.33e-49 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trre5g04851 AP2 8.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04851 K09286 - gmx:100801528 204.142