Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04850 ATGGCGCAAGTTCAAGAAAATCCTAACAATGACGCTACTGTTCTGGTTCCGAATCAATTGACAACGACGTCGTTATACGTCGGAGATCTTGATCACGATGTTAACGATTCGCAGCTTTACGATCTATTCAATCAGGTCGGTCAAGTTGTTTCTGTTCGGATCTGTAGGGATTTGGCATCTCAACAATCTTTAGGTTACGGTTACGTCAATTTCAGTAACCCTCATGACGCTGCAAAGGCAATGGATGTGCTGAATTTCACTCCACTGAACAACAAACCGATTCGGATTATGTATTCTCATCGCGACCCTAGTGTTCGGAAGAGTGGTGCTGCTAATATTTTCATCAAGAATTTGGATAGGGCAATTGATCACAAAGCTTTGTATGATACCTTTTCGGCTTTTGGAAATATTCTTTCTTGCAAGATAGCAATGGATGCTTCTGGGTTGTCTAAAGGCTATGGTTTTGTGCAATTTGAGCATGAAGAATCTGCACAAAGTGCAATTGACAAGTTAAATGGTATGCTGATCAATGATAAGCCGGTCTATGTTGGTCATTTCCAACGGAAGCAGGATAGAGATAATGCATTGAGTAATGCGAAGTTTAATAATGTCTATGTGAAAAACCTATCGGAGGGAGTTACAGATGATGACTTGAAGAACACTTTTGGAGAATATGGAACTATTACTAGTGCTGTAGTAATGAGAGATGTAGATGGTAAATCGAAATGTTTTGGTTTTGTCAATTTTGAAAATGCAGATGCTGCTGCTAAAGCTGTGGAGGCACTTAATGGAAAGAAATTTGATGACAAGGAGTGGTATGTTGGAAAAGCTCTAAAAAAATATGAAAGGGAGCTTGAACTGAAAGAAAAACATGAGCAGAGTATGAAGGAAACTGTTGACAAATTTTATGGTGCAAACTTGTATCTCAAAAACCTGGATGACACTGTCAGCGATGAAAAACTTAGCGAACTGTTCTCCGAGTTTGGTACAGTAACTTCATGCAAGATTCTGCGAGATCCACAGGGAATTAGTAGGGGATCTGGATTTGTTGCTTTTTCGACTCCCGAGGAAGCAACTCGAGCTCTTGCTGCGATGAATGGCAAAATGGTTGCAGGCAAACCTCTCTATGTTGCCCCTGCACAGAAAAAGGAAGAGAGAAAAGCAAGGTTACAGGCACAATTTTCACAAGTGAGGCCGGTTGCAATGGCTCCTATTGCGCCTAGAATGCCATTTTACCCTCCGGGTGTTCCAGGGATGGGACAACAAATTATGTATGGTCAAGCTCCTCCAGCCTTCATATCTCAGGCTGGATATGGTTACCCACAGCAACTAGTTCCTGGAATGAGACCAGGTGGTGCTCCAATGCCAAACTTCTTTGTGCCCATGGTTCAGCAGGGTCAACAAGGCCAGCGTCCGGGCGGACGGCGAGGAGCAGGTCCTATGCAACAACTCCCACAGTCAATGCCAATGATGCAACAACAGATGCTTCCAAGGGGACGTGTCTATCGCTATCCTCCTGGTCGCAACCTGCAAGGTATTCCGCTGCCAGGAGTAGCTGGAGGAACGCCCATGCAGGCTCTGGCCACAGCCCTTGCAAATGCTCCACCTGAACAGCAGAGGACTATGCTCGGTGAAGTTTTATACCCGCTAGTAGAGAAGATTGAGCATGGAGGAGCTGCAAAGGTTACAGGGATGCTTTTGGAGATGGACCAGCCTGAAGTGTTACATCTGATTGAGTCACCAGAGGCTCTCAAGACAAAAGTTGCTGAAGCCATGGATGTGTTGAGAAATGTTAGCCCAACTGATCAACTCGCGTCTCTCTCTCTTAATGACAATCTCGAGTCTTAG 1848 0.4448 MAQVQENPNNDATVLVPNQLTTTSLYVGDLDHDVNDSQLYDLFNQVGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMDVLNFTPLNNKPIRIMYSHRDPSVRKSGAANIFIKNLDRAIDHKALYDTFSAFGNILSCKIAMDASGLSKGYGFVQFEHEESAQSAIDKLNGMLINDKPVYVGHFQRKQDRDNALSNAKFNNVYVKNLSEGVTDDDLKNTFGEYGTITSAVVMRDVDGKSKCFGFVNFENADAAAKAVEALNGKKFDDKEWYVGKALKKYERELELKEKHEQSMKETVDKFYGANLYLKNLDDTVSDEKLSELFSEFGTVTSCKILRDPQGISRGSGFVAFSTPEEATRALAAMNGKMVAGKPLYVAPAQKKEERKARLQAQFSQVRPVAMAPIAPRMPFYPPGVPGMGQQIMYGQAPPAFISQAGYGYPQQLVPGMRPGGAPMPNFFVPMVQQGQQGQRPGGRRGAGPMQQLPQSMPMMQQQMLPRGRVYRYPPGRNLQGIPLPGVAGGTPMQALATALANAPPEQQRTMLGEVLYPLVEKIEHGGAAKVTGMLLEMDQPEVLHLIESPEALKTKVAEAMDVLRNVSPTDQLASLSLNDNLES 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04850 615 FunFam Polyadenylate-binding protein 10 111 - -
Trre5g04850 615 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 523 600 IPR002004 GO:0003723
Trre5g04850 615 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 101 IPR000504 GO:0003723
Trre5g04850 615 CDD RRM4_I_PABPs 304 382 - -
Trre5g04850 615 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 307 375 IPR000504 GO:0003723
Trre5g04850 615 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 25 95 IPR000504 GO:0003723
Trre5g04850 615 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 181 IPR000504 GO:0003723
Trre5g04850 615 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 204 272 IPR000504 GO:0003723
Trre5g04850 615 CDD RRM2_I_PABPs 109 185 IPR045305 -
Trre5g04850 615 FunFam Polyadenylate-binding protein 288 393 - -
Trre5g04850 615 Gene3D - 5 102 IPR012677 -
Trre5g04850 615 Gene3D - 520 599 - -
Trre5g04850 615 SMART rrm2_1 306 378 IPR003954 GO:0003676
Trre5g04850 615 SMART rrm2_1 112 184 IPR003954 GO:0003676
Trre5g04850 615 SMART rrm2_1 24 97 IPR003954 GO:0003676
Trre5g04850 615 SMART rrm2_1 203 275 IPR003954 GO:0003676
Trre5g04850 615 SUPERFAMILY RNA-binding domain, RBD 23 192 IPR035979 GO:0003676
Trre5g04850 615 PANTHER RNA BINDING PROTEIN 22 85 - -
Trre5g04850 615 SMART poly_2 535 598 IPR002004 GO:0003723
Trre5g04850 615 FunFam Polyadenylate-binding protein 112 185 - -
Trre5g04850 615 SUPERFAMILY PABC (PABP) domain 486 599 IPR036053 GO:0003723
Trre5g04850 615 CDD RRM1_I_PABPs 24 103 IPR034364 -
Trre5g04850 615 Coils Coil 278 298 - -
Trre5g04850 615 SUPERFAMILY RNA-binding domain, RBD 299 392 IPR035979 GO:0003676
Trre5g04850 615 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 305 382 IPR000504 GO:0003723
Trre5g04850 615 FunFam Polyadenylate-binding protein 192 287 - -
Trre5g04850 615 Gene3D - 192 288 IPR012677 -
Trre5g04850 615 Gene3D - 289 395 IPR012677 -
Trre5g04850 615 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 24 596 IPR006515 GO:0003723
Trre5g04850 615 Gene3D - 103 191 IPR012677 -
Trre5g04850 615 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 202 279 IPR000504 GO:0003723
Trre5g04850 615 Pfam Poly-adenylate binding protein, unique domain 531 595 IPR002004 GO:0003723
Trre5g04850 615 FunFam Polyadenylate-binding protein 520 601 - -
Trre5g04850 615 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 188 IPR000504 GO:0003723
Trre5g04850 615 SMART rrm1_1 112 184 IPR000504 GO:0003723
Trre5g04850 615 SMART rrm1_1 24 97 IPR000504 GO:0003723
Trre5g04850 615 SMART rrm1_1 306 378 IPR000504 GO:0003723
Trre5g04850 615 SMART rrm1_1 203 275 IPR000504 GO:0003723
Trre5g04850 615 SUPERFAMILY RNA-binding domain, RBD 199 284 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04850 Trre-Chr5 50328267 50332814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04850 1 610 Eukaryotic Initiation Factors Gene Family AT4G34110 66.086 0.0 806
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04850 K13126 - gmx:100784442 916.376