Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04849 ATGAGCACCCCTTCTCTTAAACTTGTTTCTGAATGTTTTATCAAACCATATCCTCCAATCGAAGACTCAAAACAAATATGCTATTTAACACCTTGGGATATTGCTATGTTATCTTTACACTATATCCAAAAGGGTCTTCTCTTCAAAAAACCAACATCATCATCATCATCATCATTAAACCAACAACATTTCATTGAGAATCTAGTAAACAAACTCAAACATTCACTTTCTCTCACACTTTTTCATTTCTATCCCCTCTCAGGTCGTCTTGTTACACAGAAAACCCAAGACCCTCCGTCTTACACTATTTTTGTTGATTGCAAAAACAGTGATGGAGCTAAATTTATTCATTCAACTTTAGATATCACCATAAATGATATCCTCTCACCCGTTGACGTCCCGCCGATTGTTCAATCATTTTTTGATCACCACAGAGCAACTAACCATGATGGTCACACAATGTCTTTGTTGTCTATTCAAGTAACTGAATTAGTGGATGGTGTTTTCATAGGTTGTTCCATGAACCATTCTATTGGTGATGGAACTGCTTATTGGAATTTCTTCAACGCATTTTCTGAGATATTTCAAAATGGTGGTGATAATCTTCTTCCAATTTCACATCAACCTATCCACAATAAATGGTTTCCACAAGTACTGACTCTGTATACCCCTCGCGTACCGAATTCTTCGAGAGTTGCGAACCGCGTACCCGAATTCGTACCGCGTACCAAAGCGAATTGCGAACCGTGTGACTATGGTTATGGTCCAATTATTAACCTTCCTTTCAAACATCACGACGAGTTTATTCGTAGTCATGAATCACCCATTATGAGAGAGAGGATCTTCCATTTTTCAGCAGAGTCTATAGCAAAACTTAAAGCAAATGCTAATAAAGAGTCTACGACAACGAAAATATCTTCTTTTCAATCTTTATCAGCATTAGTTTGGAGGTCTATAACCCGTGTGCGCCAACTATCACATGATAAGAAAACGAGTTGTAAAATGGCTATAAACAATCGAACAAGAATGGAACCGTCTCTTCCTAAGGAATATTTTGGGAATTCAATTTACGCGGTGAGTACTGAAACAACGGTAGGTGAATTACTGGAGAACGATCTAGGATGGGCAGCATGGAAGATTCATCAGACTATTGCAAATTACGATGACAAAGTTGTGCGGCGATCATTGAACGATTGGTTACAATCTCCAATAGTTTTTCGAATGGACTTTATGGTTGATCCTTATACTGTGATGATGGGTAGTTCACCGAGGTTTAATATGTATGGGAATGAATTTGGAATGGGAAAAGCTTTAGGTGTTAGAAGTGGGTATGCTAACAAATTTGATGGAAAAATAACATCATATCCAGGTCAAGAAGGAGAAGGGAGCATTGATCTTGAAGTGTGTCTTTCACCTGATAAAATGATGGCGCTGGAAACTGATGAAGAGTTCATGAGTTCAACTTCTGTGTTTAATTTTTCAATCTAG 1488 0.3784 MSTPSLKLVSECFIKPYPPIEDSKQICYLTPWDIAMLSLHYIQKGLLFKKPTSSSSSSLNQQHFIENLVNKLKHSLSLTLFHFYPLSGRLVTQKTQDPPSYTIFVDCKNSDGAKFIHSTLDITINDILSPVDVPPIVQSFFDHHRATNHDGHTMSLLSIQVTELVDGVFIGCSMNHSIGDGTAYWNFFNAFSEIFQNGGDNLLPISHQPIHNKWFPQVLTLYTPRVPNSSRVANRVPEFVPRTKANCEPCDYGYGPIINLPFKHHDEFIRSHESPIMRERIFHFSAESIAKLKANANKESTTTKISSFQSLSALVWRSITRVRQLSHDKKTSCKMAINNRTRMEPSLPKEYFGNSIYAVSTETTVGELLENDLGWAAWKIHQTIANYDDKVVRRSLNDWLQSPIVFRMDFMVDPYTVMMGSSPRFNMYGNEFGMGKALGVRSGYANKFDGKITSYPGQEGEGSIDLEVCLSPDKMMALETDEEFMSSTSVFNFSI 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04849 495 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 8 486 - -
Trre5g04849 495 Gene3D - 264 480 IPR023213 -
Trre5g04849 495 Gene3D - 6 223 IPR023213 -
Trre5g04849 495 FunFam Tryptamine hydroxycinnamoyl transferase 263 481 - -
Trre5g04849 495 Pfam Transferase family 12 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04849 Trre-Chr5 50314419 50316589 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04849 48 479 Monolignol Biosynthesis Gene Families AT5G48930 25.280 4.81e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04849 - - gmx:100787228 657.136