Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04848 ATGAGCACCCCTTCTCTTAAACTTGTTTCTGAATGTTTTATCAAACCATATCCTCCAATCGAAGACTCAAAACAAATATGCTATTTAACACCTTGGGATATTGCTATGTTATCTTTACACTATATCCAAAAGGGTCTTCTCTTCAAAAAACCAACATCATCATCATCATCATCATTAAACCAACAACATTTCATTGAGAATCTAGTAAACAAACTCAAACATTCACTTTCTCTCACACTTTTTCATTTCTATCCCCTCTCAGGTCGTCTTGTTACACAGAAAACCCAAGACCCTCCGTCTTACACTATTTTTGTTGATTGCAAAAACAGTGATGGAGCTAAATTTATTCATTCAACTTTAGATATCACCATAAATGATATCCTCTCACCCGTTGACGTCCCGCCGATTGTTCAATCATTTTTTGATCACCACAGAGCAACTAACCATGATGGTCACACAATGTCTTTGTTGTCTATTCAAGTAACTGAATTAGTGGATGGTGTTTTCATAGGTTGTTCCATGAACCATTCTATTGGTGATGGAACTGCTTATTGGAATTTCTTCAACGCATTTTCTGAGATATTTCAAAATGGTGGTGATAATCTTCTTCCAATTTCACATCAACCTATCCACAATAAATGGTTTCCACAAGCAGAGTCTATAGCAAAACTTAAAGCAAATGCTAATAAAGAGTCTACGACAACGAAAATATCTTCTTTTCAATCTTTATCAGCATTAGTTTGGAGGTCTATAACCCGTGTGCGCCAACTATCACATGATAAGAAAACGAGTTGTAAAATGGCTATAAACAATCGAACAAGAATGGAACCGTCTCTTCCTAAGGAATATTTTGGGAATTCAATTTACGCGGTGAGTACTGAAACAACGGTAGGTGAATTACTGGAGAACGATCTAGGATGGGCAGCATGGAAGATTCATCAGACTATTGCAAATTACGATGACAAAGTTGTGCGGCGATCATTGAACGATTGGTTACAATCTCCAATAGTTTTTCGAATGGACTTTATGGTTGATCCTTATACTGTGATGATGGGTAGTTCACCGAGGTTTAATATGTATGGGAATGAATTTGGAATGGGAAAAGCTTTAGGTGTTAGAAGTGGGTATGCTAACAAATTTGATGGAAAAATAACATCATATCCAGGTCAAGAAGGAGAAGGGAGCATTGATCTTGAAGTGTGTCTTTCACCTGATAAAATGATGGCGCTGGAAACTGATGAAGAGTTCATGAGTTCAACTTCTGTGTTTAATTTTTCAATCTAG 1284 0.3668 MSTPSLKLVSECFIKPYPPIEDSKQICYLTPWDIAMLSLHYIQKGLLFKKPTSSSSSSLNQQHFIENLVNKLKHSLSLTLFHFYPLSGRLVTQKTQDPPSYTIFVDCKNSDGAKFIHSTLDITINDILSPVDVPPIVQSFFDHHRATNHDGHTMSLLSIQVTELVDGVFIGCSMNHSIGDGTAYWNFFNAFSEIFQNGGDNLLPISHQPIHNKWFPQAESIAKLKANANKESTTTKISSFQSLSALVWRSITRVRQLSHDKKTSCKMAINNRTRMEPSLPKEYFGNSIYAVSTETTVGELLENDLGWAAWKIHQTIANYDDKVVRRSLNDWLQSPIVFRMDFMVDPYTVMMGSSPRFNMYGNEFGMGKALGVRSGYANKFDGKITSYPGQEGEGSIDLEVCLSPDKMMALETDEEFMSSTSVFNFSI 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04848 427 Gene3D - 20 207 IPR023213 -
Trre5g04848 427 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 218 418 - -
Trre5g04848 427 Gene3D - 210 412 IPR023213 -
Trre5g04848 427 Pfam Transferase family 12 198 - -
Trre5g04848 427 Pfam Transferase family 213 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04848 Trre-Chr5 50314419 50316589 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04848 48 411 Monolignol Biosynthesis Gene Families AT5G48930 24.940 1.14e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04848 - - gmx:100810046 574.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04848 5 50314419 50316589 Trre5g04848 5 50314419 50316589 ECH