Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04846 ATGATGAGCACTCCTTTTCTAACACTTGTTTCTGAATCTTTCATCAAACCATATCCCTCAATTGGAAACTCAAAACAAATATGCTATTTAGCACCTTGGGATATTGCTATGTTATCTTCACACTATATCCAAAAAGGTCTCCTCTTCAAAAAACCAACATCATCATTAAACCAACAACATTTCATTGAAAATTTGGTAAACAAACTCAAACACTCTCTTTCTCTCACACTTTTCCATTTCTATCCTCTCTCAGGTCGTCTTGTTATCAAGAAAACCGAACATCCTCCTTCTTACTATGTTTATGTAGATTGCAAAAACAGTCTTGGTGCTAAATTTATTCATGCAACTTTAGATATGACCATCAATGATATTCTCTCACCTATTGATGTCCCACACATTGTTCATTCGTTTTTTGATCACCACAAAGCACTCAACCATGATGGTTGCACCATGTCTTTGTTATCAATTCAAGTCACTGAATTATTGGATGGTGTTTTCATAGGTTGTTCCATGAATCATTGTATTGGTGATGGAACTGCTTATTGGAATTTCTTTAACACATTTTCCAAGATATTTCAAAACGATAATCATGTTTGTTGTCCGATTTCACATAATAAACCTATCCACACTAGATGGTTTCCAGAAGGTTATGGTCCAATTATCAACCTCCCTTTCAAACACGAAGACGAGTTTATATATAGATATGATGATACAATCATTTTGAGAGAGAGAATATTTCATTTTTCAGCAGAGTCTATAGCGAAACTTAAAGCAAAAGCTAACAAATTATCGAATACAAAGAAAATATCTTCGTTTCAATCTTTATCAGCATTAGTTTGGAGATCTATAACTCGTGCACGTCAACTAGAACATGATCAGAGAACGACTATTAAGTTGGCTGTAAACAATCGAACAAGAATGAAACCGTCTCTTCCTAAAGAATATTTTGGGAATTCAATTTCTGCAGCGAGTGCTGAAACCACAGTCGGGGAGTTGTTGGAGAATGATCTAGGATGGGCAGCATGGAAGATTCATATGGCCATTTCAAATCATGATGATAAAGTTGTGAGAAAATGGGTTGAAGAGTGGTTACACTCACCTTTTGTGTATAAAACGGATCTGTTCTTTGATCCTTATACTGTGATGATGGGTAGTTCACCTAGGTTTAATATGTATGGGAATGAATTTGGAATGGGAAAAGCTTTAGGTGTTAGAAGTGGGTATGCTAATAAATTTGATGGAAAAATAACATCTTATCCAGGTCAAGAAGGAGAAGGGAGCATTGATCTTGAAGTGTGTCTTTCACCACATAAAATGATGGCGCTAGAAACTGATGAAGAGTTTATGAGTTCAACTTCGGTGTTTAATTCATTGTTCTAG 1380 0.3543 MMSTPFLTLVSESFIKPYPSIGNSKQICYLAPWDIAMLSSHYIQKGLLFKKPTSSLNQQHFIENLVNKLKHSLSLTLFHFYPLSGRLVIKKTEHPPSYYVYVDCKNSLGAKFIHATLDMTINDILSPIDVPHIVHSFFDHHKALNHDGCTMSLLSIQVTELLDGVFIGCSMNHCIGDGTAYWNFFNTFSKIFQNDNHVCCPISHNKPIHTRWFPEGYGPIINLPFKHEDEFIYRYDDTIILRERIFHFSAESIAKLKAKANKLSNTKKISSFQSLSALVWRSITRARQLEHDQRTTIKLAVNNRTRMKPSLPKEYFGNSISAASAETTVGELLENDLGWAAWKIHMAISNHDDKVVRKWVEEWLHSPFVYKTDLFFDPYTVMMGSSPRFNMYGNEFGMGKALGVRSGYANKFDGKITSYPGQEGEGSIDLEVCLSPHKMMALETDEEFMSSTSVFNSLF 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04846 459 Pfam Transferase family 9 449 - -
Trre5g04846 459 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 10 450 - -
Trre5g04846 459 Gene3D - 235 444 IPR023213 -
Trre5g04846 459 Gene3D - 7 219 IPR023213 -
Trre5g04846 459 FunFam Tryptamine hydroxycinnamoyl transferase 232 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04846 Trre-Chr5 50285659 50287038 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04846 49 443 Monolignol Biosynthesis Gene Families AT5G48930 26.969 3.19e-31 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04846 - - gmx:100787228 646.351