Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04845 ATGAGCAATTCTTCTCTTACACTTGTTTCTGAATCTTTCATCAAACCATATCCTCCAATCGAAGACTCAAAACAAATATGCTATTTAGCACCTTGGGATATTGCTATGTTATCTACAAACTATATCCAAAAGGGTCTTCTCTTCAAAAAACCAACATCATCATCATTAAACCAACAATATTTCATTGAGAATCTAGTAAACAAACTCAAACACTCTCTTTCTCTTACACTTTTCCATTTCTATCCTCTCTCAGGTCGTCTTGTTATCAAGAAAATAGAAGATCCTCCTTCTTACTCTGTTTATGTAGATTGCAAAAATAGTCTTGGAGCTAAATTTATTCATGCAGCTTTAGATATCATCATCAATGATATTCTCTCACCTATTGATGTTCCACACATTGTTCATTCGTTTTTTGATCAACATAAAGCACTCAACCATGATGGTTGCACCTTGCCTTTGTTGTCTATTCAAGTCACTGAATTATTAGATGGTGTTTTCATAGGTTGTTCCATGAATCATTGTATTGGTGATGGAACTGCTTATTGGAATTTTTTCAACACATTTTCTGAGATATTTCAAAATGATAATCATGTTTCACATCAACCTATCAACACTAGATGGTTTCCAGAAGGTTATGGTCCAATTATCAACCTCCCTTTCAAACATGAAGATGAGTTTATTCATAGATACGATGAAACAACCATTTTGAGAGAGAGAATATTTCATTTTTCAGCAGAGTCTATAGCGAAACTTAAAGCAAAAGCTAACAAAGAAATAGAATCTAATACAAACAAGATCTCTTCGTTTCAATCTTTATCAGCATTGGTTTGGAGATCTATAACTCGCGCACGCCAACTAGAACATAATAAGAGAACAACTTGTAAGTTGGCTGTAAACAATCGAACAAGACTGAAACCGTCTCTTCCTAACGAATATTTTGGGAATTCAATTTCTGCAACGAGTACTGATACGACAGTCGGGGAGTTGTTGGAGAATGATCTAGGATGGGCAGCATGGAAGATTCATATGGCTATTACCAATCATGATGATAAAGTTGTGAGAAATTGGGTTGAAGAGTGGTTACATTCGCCTTTTGTGTATCGAATGGATTTGTTCTTTGATCCTTATACTGTGATGATGGGTAGTTCACCGAGGTTTAATATGTATGGGAATGAATTTGGAATGGGAAAAGCTTTAAGTGTTAGAAGTGGGTATGCAAACAAATTTGATGGAAAAATAACATCATATCCAGGTCAAGAAGGAGGAGGGAGCATTGATCTTGAAGTGTGTCTTTCACCAAATAAAATGATGGCGCTAGAAACTGATGAAGAATTCATGAGTTCAACTTCAATGTTTAATCCATTGTTCTAG 1371 0.3516 MSNSSLTLVSESFIKPYPPIEDSKQICYLAPWDIAMLSTNYIQKGLLFKKPTSSSLNQQYFIENLVNKLKHSLSLTLFHFYPLSGRLVIKKIEDPPSYSVYVDCKNSLGAKFIHAALDIIINDILSPIDVPHIVHSFFDQHKALNHDGCTLPLLSIQVTELLDGVFIGCSMNHCIGDGTAYWNFFNTFSEIFQNDNHVSHQPINTRWFPEGYGPIINLPFKHEDEFIHRYDETTILRERIFHFSAESIAKLKAKANKEIESNTNKISSFQSLSALVWRSITRARQLEHNKRTTCKLAVNNRTRLKPSLPNEYFGNSISATSTDTTVGELLENDLGWAAWKIHMAITNHDDKVVRNWVEEWLHSPFVYRMDLFFDPYTVMMGSSPRFNMYGNEFGMGKALSVRSGYANKFDGKITSYPGQEGGGSIDLEVCLSPNKMMALETDEEFMSSTSMFNPLF 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04845 456 FunFam Tryptamine hydroxycinnamoyl transferase 223 442 - -
Trre5g04845 456 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 9 447 - -
Trre5g04845 456 Gene3D - 221 441 IPR023213 -
Trre5g04845 456 Gene3D - 2 213 IPR023213 -
Trre5g04845 456 Pfam Transferase family 6 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04845 Trre-Chr5 50280340 50281710 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04845 48 440 Monolignol Biosynthesis Gene Families AT5G48930 26.241 6.30e-29 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04845 - - gmx:100787228 648.277