Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04844 ATGACTTCTTCTATAGCTCAAAGAGTTTCAGAATGTTTTATCAGATCCCTACATCCTATTGAAGATTCAAACAAAATTTGTTATTTAACAGGTTGGGATATTGCTATGTCATCTATGCACTACATCCAAAAAGGCCTATTATTCAAAAAGCCTCAAACATCACCAAATAACCAACAAGATTTCATTGAGAATTTGTTGAAGAAGCTAAAAAACTCCCTCTCACATGCTCTTTTCTATTTCTATCCTCTTTCTGGCCATCTTGTCACCCACAAAACTCAAGACCCTCACTCTTATACTATTTTTGTTGATTGTAGTAACAATAACCCCGGAGCTAGATTCATCTATGCAACCGCGGACGCGACCATTTCTGATATCCTCTCACCGGTTGATGTTCCTCCGATTGTTGAGTCATTTTTTGATCTCAACAAAGCAACCAACCATGACGGTCACACCATTCCGTTGTTATCAATTCAAGTCACAGAGCTAGTTGATGGTGTTTTCGTAGCTTGTTCCATGAATCATTGTATTGGTGACGGTACTTCTTTTTGGAATTTTTTTAATATATGGTCCGAGATATTTCAATCTCAAGATCGCGAAAATGAAAACAATATTGTTCTCATTTCGCGCCAACCATTTCACAATTGTTGGTTTCCAGAAGATTACGGTCCACCAACCAACCTTCCCTTTAAACATCACCAAGAGTTCATTAGCGAATATCAATCTCCGATCTTCAGAGATAGATTCTTCCATTTTACAAAAGAGTATATCGCAAAACTAAAATTAAAGGTGAACAACGAGTTTAACACAACAAAAATATCTTCATTTCAAGCCTTATCAGCCCATGTTTGGCGATGTGTGACACGCGCACGCCAACTACCAAACAATCAAAAAACAAGTTGTAAATTAGCGATAAACAATCGATCAAGAATGGAACCTCCATTGCCAAAAGAGTATTTCGGAAATGCAGTTGATGTGGTTAGTGTTGAAACATCTGTTGAGGAGTTGCTTAAGAACAATCTAGGATGGGCAGCAATGAAGGTTAATGAAATTGTGGTGAATCATGATGACAAAGAAGTGAGAAAAATGTTAAAGAAGTGGTTAGAGTCTCCTATTGTATACCAACTTGGTTGTCACTTTGATCCTCATAGTATCACAGTGTCAAGTTCACCAAGGTTTGATATGTATGGGAATGAATTTGGAATGGGAAAAGCTATAGCTGTTCTTAGTGGATATGGTAACAAATTTGATGGTAATGTGTCATCATATCAAGGGTATGAAGAAGGAAGCATTGATTTGGCATTGACTCTTATGCCTGATGCAATGAAAGTGTTGGAATCAGATGAGGAGTTCATGAATGCAGTTTGA 1365 0.3736 MTSSIAQRVSECFIRSLHPIEDSNKICYLTGWDIAMSSMHYIQKGLLFKKPQTSPNNQQDFIENLLKKLKNSLSHALFYFYPLSGHLVTHKTQDPHSYTIFVDCSNNNPGARFIYATADATISDILSPVDVPPIVESFFDLNKATNHDGHTIPLLSIQVTELVDGVFVACSMNHCIGDGTSFWNFFNIWSEIFQSQDRENENNIVLISRQPFHNCWFPEDYGPPTNLPFKHHQEFISEYQSPIFRDRFFHFTKEYIAKLKLKVNNEFNTTKISSFQALSAHVWRCVTRARQLPNNQKTSCKLAINNRSRMEPPLPKEYFGNAVDVVSVETSVEELLKNNLGWAAMKVNEIVVNHDDKEVRKMLKKWLESPIVYQLGCHFDPHSITVSSSPRFDMYGNEFGMGKAIAVLSGYGNKFDGNVSSYQGYEEGSIDLALTLMPDAMKVLESDEEFMNAV 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04844 454 Gene3D - 9 231 IPR023213 -
Trre5g04844 454 Gene3D - 232 446 IPR023213 -
Trre5g04844 454 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 9 452 - -
Trre5g04844 454 Pfam Transferase family 29 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04844 Trre-Chr5 50269909 50271273 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04844 69 445 Monolignol Biosynthesis Gene Families AT5G48930 29.049 8.56e-38 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04844 - - lja:Lj1g3v1664450.1 634.795