Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04843 ATGATGAGTTCCTCTGCAGTTCAACATGTTTCAGAATGTTTTATCAAACCACTTTTCCCCATTGATGAATCAAAACAAATATGTTATTTGACAACTTGGGATATTGCAATGTTATCTATGCATTACATCCAAAAAGGCTTGTTATTTAAAAAGCCACCAACTCCAAATAATCAAAAAGATTTCATTGATAATCTTTTGGAGAATCTCAAACAATCTATTTCTCTAGCTCTCTTCCATTTCTGTCCACTATCCGGTCGCCTTGTCACCCAAAAAACTCAAGAGCCTCCAACTTATTCGGTTTTCGTTGATTGTAGTAACGATAACCGCGGAGCTAGATTCATCTATGCAACTTTGGATGCAACTATATATGATATCCTATCGCCGGTTGATCATCCACCGGTCGTGGACTCATTATTTGATCTCGATCAAGCAATCAATCATGATGGTCATACCATGCCATTGTTATCCATTCAAGTCACTGAGCTAGTGGATGGTGTTTTCGTAGGTTGTTCTATGAATCATTGCATTGGTGATGGAACTTCTTTTTGGAATTTCTTTAATGTATGGTCAGAAATATTTCAAGCTCGAGAGAAAGGTCGCGATGTTCTAATGTCACACCAACCATTTCACAATCGTTGGTTCTTAGAAGGTTGCGGTCCACTAATTAATCTTCCATTCAAACATCATGATGAGTTTACGAGTAGATTTGAAGCGCCGAAGTTGAGAGAGAGATTCTTCCACTTTAGCGCGGAGTCTATTGCAAAACTGAAAGCTAAGGCCAATGAGGAAGCTAATACAAATGAAATCTCTTCGTTCCAATCATTATCGGCTTTTCTATGGAAATCTGTGACGCGTGCACGTGGACTAGCACATGATCAAAAAGTTAGTTGTAAGTTTGCCATAAACAATAGACCAAGAATCAAGCCACCTCTCCCACAAGAGTACTTTGGAAACACGGTTGATGTGGTGAGTACCGAAACGACTGTTGGGAAATTGCTTGAGAATAATTTGGGATGGGCGGCGTGGAAGGTGCATACACTAGTTGTGAATCATGATGACAGAGAGGTGAGAGAGATGATTGAAAAGTGGTTAGAGTCTCCTATTGTCTATCAACTTGGTCGCCACTTTGATCCCTTCAGCGTGGTGATGTCAAGTTCACCGAGATTCAATATGTATGGGAATGAATTTGGAATGGGAAAAGCGGTCGCAGTTCTAAGCGGCTATGCGAATAAATTTAATGGGAATGTGACAGCTTACGAGGGATACGAAGGAGGGGGAAGCATGGTTTTAGCAGTGTCTCTTTTGCCTGATGCAATGCGTGCGCTAGAATTAGACGAGAATTTTATGAATGTAGTTTCTGTGGCCAATTTCGCTAATATGCCTTGA 1386 0.404 MMSSSAVQHVSECFIKPLFPIDESKQICYLTTWDIAMLSMHYIQKGLLFKKPPTPNNQKDFIDNLLENLKQSISLALFHFCPLSGRLVTQKTQEPPTYSVFVDCSNDNRGARFIYATLDATIYDILSPVDHPPVVDSLFDLDQAINHDGHTMPLLSIQVTELVDGVFVGCSMNHCIGDGTSFWNFFNVWSEIFQAREKGRDVLMSHQPFHNRWFLEGCGPLINLPFKHHDEFTSRFEAPKLRERFFHFSAESIAKLKAKANEEANTNEISSFQSLSAFLWKSVTRARGLAHDQKVSCKFAINNRPRIKPPLPQEYFGNTVDVVSTETTVGKLLENNLGWAAWKVHTLVVNHDDREVREMIEKWLESPIVYQLGRHFDPFSVVMSSSPRFNMYGNEFGMGKAVAVLSGYANKFNGNVTAYEGYEGGGSMVLAVSLLPDAMRALELDENFMNVVSVANFANMP 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04843 461 Gene3D - 227 444 IPR023213 -
Trre5g04843 461 FunFam Tryptamine hydroxycinnamoyl transferase 227 445 - -
Trre5g04843 461 Gene3D - 2 219 IPR023213 -
Trre5g04843 461 Pfam Transferase family 12 447 - -
Trre5g04843 461 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 9 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04843 Trre-Chr5 50266707 50268092 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04843 55 443 Monolignol Biosynthesis Gene Families AT5G48930 27.139 1.34e-36 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04843 - - lja:Lj1g3v1664450.1 669.848