Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04842 ATGAATACCCCGATAGTTCAACGTGTTTCGGAATGTTTTATCAAACCACTTCACTCCATTCCAGAGTCAAACCAAATATGTTATTTGACGACATGGGATATTGCCATGTCGTCAATGAACTACATTCAGAAAGGCCTTTTATTCAAAAAACCAAATAACCAACAAGATTTCGTCGAAAATCTTTTAGAGAAGCTCAAACACTCACTCTCTATAGCTCTATTCCATTTCTATCCTCTGTCTGGTCGTGTCGTTACACGAAAATCTCAAGACCCTCCCTCTTATGTTATTTTTGTTGATTGCAGTAACAATAACCCGGGAGCTAAATTTATCTACGCAACTTTGGATATGACTGTATCCGATATCCTTACCCCGACCGATGTTCCACTGGTTGTTAAGTCATTGTTTGATCTCGATAAAGCAATCAATCATGACGGTCACACCATTCCCTTGTTATCTATACAAGTCACTGAACTAGTGGATGGTGTTTTCGTAGGTTGTTCCATGAATCATTATATTGGTGATGGGACTTCTTATTGGAAATTTTTTAATGCATGGTCTGAAATATTTCAAGCTCAAGGCCAAGGGCGCGATGTTCCCATTTCGCGCCAACCCTTGCACAATCGTTGGTTTCCAGAAGGTTATGGTCCACTAATCAATCTTCCATTCAAACATCATGACGAGTTTATAAGTAAATATGAAGCACCTGAGCTGGTAGAGAGATTCTTCCACTTTTCAGCGGAGTCTATTGCGAAATTGAAAGCAAAGGCCAATATCGAGTCTAATACAAACAAAATCTCTTCGTTCCAGTCCTTAACTGCACATATTTGGAGATGTATAACTCGTGCTCGCGGGATATCAAATGATCAAATAACAACTTGTATGTTAGCTGTAAACAATCGACCGAGAATTAAACCATCTCTTCCGGATGAGTACTTTGGGACATCAATTGATACGGTAGCTACACAATCGACCGTAGGAGATTTGCTTGAGAATAATTTGGGATGGGCAGCATTGAAGGTGCATGTTGCTATTGCAAACCATGATGACCTAGAAGTGCGAAAGATAGTCAAAAAGTGGTTAGAATCTCCGACTATATTCAGCCTTAACCGCCACTTACTTCCCTTTAGTGTCGCGATGATAAGCTCACCGAGGTTTAATATGTATGGAAATGAATTTGGAATGGGGAAACCAGTGGCTGTTCTTAGTGGTCATGCAAACAAATGTGATGGTAATGTGACATCATACGAGGGGCGCGACGGAGGGAGCATAGATTTTGAAATTTCTTTGTCTACAAATGCAATGAGAGCACTCGAATCGGACGGGGATTTCATGACCGCAGCTTCAGTGATCAATCCCTCTAATTAA 1365 0.4051 MNTPIVQRVSECFIKPLHSIPESNQICYLTTWDIAMSSMNYIQKGLLFKKPNNQQDFVENLLEKLKHSLSIALFHFYPLSGRVVTRKSQDPPSYVIFVDCSNNNPGAKFIYATLDMTVSDILTPTDVPLVVKSLFDLDKAINHDGHTIPLLSIQVTELVDGVFVGCSMNHYIGDGTSYWKFFNAWSEIFQAQGQGRDVPISRQPLHNRWFPEGYGPLINLPFKHHDEFISKYEAPELVERFFHFSAESIAKLKAKANIESNTNKISSFQSLTAHIWRCITRARGISNDQITTCMLAVNNRPRIKPSLPDEYFGTSIDTVATQSTVGDLLENNLGWAALKVHVAIANHDDLEVRKIVKKWLESPTIFSLNRHLLPFSVAMISSPRFNMYGNEFGMGKPVAVLSGHANKCDGNVTSYEGRDGGSIDFEISLSTNAMRALESDGDFMTAASVINPSN 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04842 454 Gene3D - 225 439 IPR023213 -
Trre5g04842 454 Pfam Transferase family 11 443 - -
Trre5g04842 454 Gene3D - 2 218 IPR023213 -
Trre5g04842 454 FunFam Tryptamine hydroxycinnamoyl transferase 223 440 - -
Trre5g04842 454 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 9 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04842 Trre-Chr5 50264408 50265772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04842 48 438 Monolignol Biosynthesis Gene Families AT5G48930 28.398 7.33e-39 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04842 - - lja:Lj1g3v1664450.1 648.662