Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04841 ATGGCTCTTCTACTAGACAACTGTGAAGGCATTTTACTCTCACTAGATTCCCACAAATCAGTTCCAGCTCCATTCCTCACCAAAACATACCAACTTGTCGATGATCCTTCCACAGATCACATCGTCTCTTGGGGTGAAGATGATTCCACCTTCGTCGTCTGGCGTCCTCCTGAATTCGCTAGAGACCTCCTCCCTAACTACTTCAAACACAACAACTTCTCCAGCTTCGTTCGCCAACTCAACACCTATGGTTTTAGGAAGATTGTACCTGACAGATGGGAGTTTGCAAATGAATATTTCAAAAAAGGTGAAAAACATTTACTTTGTGAGATTCATAGAAGAAAAACAACACAGCCACAACAAAACATCAATCATCATCATCTTCACCATCATCATCAAAATGTTCCACCAAGTTTCTTTCCATTTTCAAACACTACTAGAGTAAGCATTTCTCCACCAAATGATCATTACTCTTCTGATGAACATCTCAACAATTGGTCTTGTGATTCTCCACCTTTAACTTCTCCGTCATTCGGTACCGGAGGAGGCACAACAACAACAGCAGCAGCAGCAGCAACAAATAACTACAATACTTCTGTTACTGCTCTTTCTGAAGATAATGAAAGATTAAGAAGAAGTAACAACATGTTAATGTCTGAGTTAGCTCATATGAAGAAGCTTTACAATGATATAATATATTTTGTTCAGAATCATGTTAAGCCGGTAACTCCGAGTAATACTTACTCTTCTTCATTTTTACTACCACAAGCTTCTTCAAATCCTATGAATGGTGTTGGTGGTGGTGGTGGTAATGTTTCAATGGTGCAAAGGCCAATGAATAATCATAATCAGCTTTTGGGGTATTATTGTAATAATAATAGCCCTAAAAATGTTACTCAGTTTCAAGCACAAAATCAATCTCATCATGGTGTGAATGTGAATGTGAATGTTAACTCTCCAACAAATACATCAAGAAGCTCTATTACAATGGTGGAAGGGCATAACAGTAATAACAGCAGCAAGACTAAGCTTTTTGGAGTATCACTACAGTCCAACAAGAAAAGAGTGCACCCTGAATGTGGATCTAATAATCCAAATAATTTGGAAACCAACAAGGCTCGTTTGGTTTTGGATCAAAAAGATCATGATTTTGATTTGGGTTTGAATCTCATGCCTCCTTCTGCTTGTTAG 1191 0.382 MALLLDNCEGILLSLDSHKSVPAPFLTKTYQLVDDPSTDHIVSWGEDDSTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEYFKKGEKHLLCEIHRRKTTQPQQNINHHHLHHHHQNVPPSFFPFSNTTRVSISPPNDHYSSDEHLNNWSCDSPPLTSPSFGTGGGTTTTAAAAATNNYNTSVTALSEDNERLRRSNNMLMSELAHMKKLYNDIIYFVQNHVKPVTPSNTYSSSFLLPQASSNPMNGVGGGGGNVSMVQRPMNNHNQLLGYYCNNNSPKNVTQFQAQNQSHHGVNVNVNVNSPTNTSRSSITMVEGHNSNNSSKTKLFGVSLQSNKKRVHPECGSNNPNNLETNKARLVLDQKDHDFDLGLNLMPPSAC 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04841 396 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre5g04841 396 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 312 IPR027725 -
Trre5g04841 396 Coils Coil 200 220 - -
Trre5g04841 396 Gene3D - 17 116 IPR036388 -
Trre5g04841 396 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Trre5g04841 396 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre5g04841 396 FunFam Heat stress transcription factor B-4 17 115 - -
Trre5g04841 396 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre5g04841 396 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre5g04841 396 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre5g04841 396 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04841 Trre-Chr5 50215791 50217112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04841 1 391 HSF AT1G46264 52.785 4.55e-118 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Trre5g04841 HSF_DNA-bind 1.9e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04841 K09419 - gmx:100781389 497.278