Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04837 ATGGACTCTAACCACTTAAAACCATCCTCTGAAGATCAGATTGACATGATGTTGATGATGATGATGCAACTACCTGAACTTTCTTCATCTAACGGTAATAACAACAACACCATCAATGAATTTCCACCGTCAGATCAAGAACTTTATGGTTCTAGTTCTACTAATACACGTCCTCTTGCAGATTTAATTGATAAGTACCCTTCTAATTCAATCCCAAATTGGTCTTCAACTTTACCCTCACAATCCACAAACACAATTACTTTCGCTAATAACAACATGTTTCAACAACTACAACAAACAACACCACCACCACCAACGTTAATGTTTTCGAATTCGAACAACGATGTTGTTACGAATACGAATCATTACTCTGGTGGTGGTGCAGCGTTGTCGCCATCAGAGAAACGAAACTCGATGGCGGCGATGAGAGAAATGATATTCAGAATAGCAGCTATGCAACCAATTTACATTGATCCAGAATCAGTAAAACCACCAAAGAGAAGAAACGTGAAGATTTCAAAAGATCCACAGAGTATAGCAGCTAGACATAGAAGAGAAAGAATAAGTGAGAAAATAAGGATTCTACAGAGAATGGTACCAGGTGGAACTAAAATGGATACTGCATCAATGTTAGATGAAGCTGTTCATTATGTTAAGTTTCTTAAGACACAACTTAAGTCACTTCAAGAACGTGCTTCTGTAGCTAACAATAACAGAACAGTTGCAGGTTCAGGAATAGGGTTCCCTGTTTCATTGGCTAAGCCTTATCAAGGTCGTAATGTTGATCATTATGCATGA 798 0.3797 MDSNHLKPSSEDQIDMMLMMMMQLPELSSSNGNNNNTINEFPPSDQELYGSSSTNTRPLADLIDKYPSNSIPNWSSTLPSQSTNTITFANNNMFQQLQQTTPPPPTLMFSNSNNDVVTNTNHYSGGGAALSPSEKRNSMAAMREMIFRIAAMQPIYIDPESVKPPKRRNVKISKDPQSIAARHRRERISEKIRILQRMVPGGTKMDTASMLDEAVHYVKFLKTQLKSLQERASVANNNRTVAGSGIGFPVSLAKPYQGRNVDHYA 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04837 265 FunFam BHLH transcription factor 175 239 - -
Trre5g04837 265 MobiDBLite consensus disorder prediction 26 60 - -
Trre5g04837 265 Pfam Helix-loop-helix DNA-binding domain 179 221 IPR011598 GO:0046983
Trre5g04837 265 Coils Coil 211 238 - -
Trre5g04837 265 CDD bHLH_AtIND_like 173 231 - -
Trre5g04837 265 Gene3D - 171 241 IPR036638 GO:0046983
Trre5g04837 265 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 221 IPR011598 GO:0046983
Trre5g04837 265 SMART finulus 178 227 IPR011598 GO:0046983
Trre5g04837 265 MobiDBLite consensus disorder prediction 26 59 - -
Trre5g04837 265 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 176 232 IPR036638 GO:0046983
Trre5g04837 265 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 237 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04837 Trre-Chr5 50168227 50169024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04837 139 245 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 78.505 8.49e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre5g04837 HLH 9.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04837 - - tpra:123913324 408.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04837 5 50168227 50169024 Trre5g04837 5 50168227 50169024 ECH