Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04835 ATGAATTTCAAGGGTTTTGGGAATGATCCGGGAGCGTCGGCCGCCGCAGCTGGTGGTGGAGTTGGGAGGACACCGCTGCCGGGGAATTTTCCGCTTTCGCGGCAACCGTCGGTTTATTCTTTGACGGTTGATGAATTTATGAACAGTATGGGTGGTTCTGGGAAGGATTTTGGGTCAATGAATATGGATGAATTGTTGAAGAATATTTGGACTGCAGAAGAGGTTCAAACAATGGGTGGTGAAGAAGCTATTAATCAGTTGCAAAGACAAGGTTCGTTGACGCTGCCGAGAACTCTTAGTCAGAAAACAGTTGATGAAGTTTGGAAGGATATTTCAAAGGATTATGGTCCTAATTTGGCTGCACCACAGGCTCAGAGACAGCCAACTTTAGGAGAAATGACTTTGGAAGAGTTTTTGGTTAGAGCTGGTGTTGTTAGGGAAGATGCTAAACCTAATGATGGTGTTTTTCTTGATCTGGCTCGTGTCGGAAATAATGGAAATTTAGGTTTGGCTTTTCAGCCTCAGCAGATGAATAAAGTTGGTGGTTTTATGGGGAATAATAGATTGAATGGTAATGATGATCCACTTGTTGGTGGTCTTCAGAGTCCTACGAATTTGCCGTTGAATGTTAATGGGATTCGATCAACGAATCAACAACAGATGCAGAATTCACAGTCTCAGCAACAACACCAGAATCAACAACTTCAGCAACTTCAACAACAACATCAACAGCAACAACAGCAGCAGCAGCAGCAGATATTTCCGAAGCAACCTGGTTTGAACTATGCAACTCAGATGCCTCTGACTGGTAATCAAGGAATGAGAGGTGGAATTGTGGGGCTTTCTCCTGATCATGGAATGAATGGTAATCTTGTGCAAGGTGGAGGGATTGGTATGGTTGGTTTGGCACCTGGGGCTGTTCAAATTGGTGCTGGATCACCGGCTAACCAGCTATCTAGTGATCAAATGGGAAAGAGTAACGGTGATACTTCTTCTGTATCGCCGGTTCCTTATGTTTTCAATGGTGGTATGCGAGGTAGGAAGGGTAATGGAGCTGTAGAGAAGGTAATTGAGAGGAGGCAGAGAAGAATGATCAAGAATAGGGAGTCCGCTGCTAGATCTCGGGCTCGCAAGCAGGCTTATACCATGGAATTGGAAGCAGAAGTTGCAAAGTTAAAAGAAGAGAATGAAGAACTTCAGAAAAAGCAGGAGCAAATCATGGAAATTCAGAAAAATCAAGTTAAGGAAATGATGAATTTGCAGCGAGAAGTCAAGAGAAAATGCTTAAGACGAACACAAACTGGTCCGTGGTAG 1314 0.4384 MNFKGFGNDPGASAAAAGGGVGRTPLPGNFPLSRQPSVYSLTVDEFMNSMGGSGKDFGSMNMDELLKNIWTAEEVQTMGGEEAINQLQRQGSLTLPRTLSQKTVDEVWKDISKDYGPNLAAPQAQRQPTLGEMTLEEFLVRAGVVREDAKPNDGVFLDLARVGNNGNLGLAFQPQQMNKVGGFMGNNRLNGNDDPLVGGLQSPTNLPLNVNGIRSTNQQQMQNSQSQQQHQNQQLQQLQQQHQQQQQQQQQQIFPKQPGLNYATQMPLTGNQGMRGGIVGLSPDHGMNGNLVQGGGIGMVGLAPGAVQIGAGSPANQLSSDQMGKSNGDTSSVSPVPYVFNGGMRGRKGNGAVEKVIERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENEELQKKQEQIMEIQKNQVKEMMNLQREVKRKCLRRTQTGPW 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04835 437 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 362 377 IPR004827 GO:0003700|GO:0006355
Trre5g04835 437 MobiDBLite consensus disorder prediction 313 333 - -
Trre5g04835 437 MobiDBLite consensus disorder prediction 1 20 - -
Trre5g04835 437 SUPERFAMILY beta-sandwich domain of Sec23/24 210 268 - -
Trre5g04835 437 SUPERFAMILY Leucine zipper domain 359 408 IPR046347 GO:0003700|GO:0006355
Trre5g04835 437 Coils Coil 375 427 - -
Trre5g04835 437 Pfam bZIP transcription factor 359 410 IPR004827 GO:0003700|GO:0006355
Trre5g04835 437 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 5 357 414 - -
Trre5g04835 437 Coils Coil 221 252 - -
Trre5g04835 437 MobiDBLite consensus disorder prediction 217 253 - -
Trre5g04835 437 CDD bZIP_plant_BZIP46 359 413 - -
Trre5g04835 437 SMART brlzneu 355 420 IPR004827 GO:0003700|GO:0006355
Trre5g04835 437 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 32 437 IPR043452 GO:0003700|GO:0045893
Trre5g04835 437 Gene3D - 357 426 - -
Trre5g04835 437 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 357 408 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04835 Trre-Chr5 50145041 50148362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04835 30 437 bZIP Transcription Factor Family AT3G19290 46.818 8.92e-92 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre5g04835 bZIP_1 2.8e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04835 K14432 - gmx:100819313 509.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04835 5 50145041 50148362 Trre5g04835 5 50145041 50148362 ECH