Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04829 ATGGTTGCACTTACAGCCATGGCAAGAAGCTTCCATTGCCAGCAACACTCTTTAATCAACAGCAATACCATTGGTAAATCTTCAACAGCACGACACTACTGGCTAAGGCCTGCTACTACAGGAACAGGAGTTACTCGACATTATAGACAAATTTGTGCAGCGGCTCAACAGCGACCGACATGGCTCCCAGGACTTGATTCCCCAACTTATCTTGATGGAACTCTGCCAGGAGATTTTGGGTTCGACCCACTTGGGCTTGGAGAGGATCCTGAAAGCTTAAAGTGGTATGTGCAAGCAGAGTTGGTTCATTGTCGCTTTGCTATGCTTGGGATCTTTGGAATTCTAGTCACAGATCTACTTCGCGTCTCAGGAGTTAGTAGCATACCAGTTTGGTTTGAAGCTGGAGCAGTAAAATATGAGATTGCAAACACAGGGACGCTCGTCATTGTTCAGCTACTCTTGATGGGGTTTGCCGAAACAAAAAGGTACATGGATTTTGTTAGTCCTGGATCTCAAGCTAAAGACGGTTCCTTCTTTGGATTGGAAGCTTCATTTGGTGGCCTAGAGCCAGGGTATCCTGGAGGTCCTCTGCTAAATCCTCTTGGCCTAGCTAAAGACATTAAAAATGCTCATGACTGGAAGCTTAAAGAGATAAAAAATGGGCGACTTGCAATGGTGGCAATACTTGGCATCTTTGTACAAGCTTCAGTGACTCATGTTGGACCTATTGATAACCTTGTTGAGCATCTCTCAAATCCATGGCATAAGACTATTATTCAGACCCTTGCAAGTTCTAGTTCTTAG 804 0.4465 MVALTAMARSFHCQQHSLINSNTIGKSSTARHYWLRPATTGTGVTRHYRQICAAAQQRPTWLPGLDSPTYLDGTLPGDFGFDPLGLGEDPESLKWYVQAELVHCRFAMLGIFGILVTDLLRVSGVSSIPVWFEAGAVKYEIANTGTLVIVQLLLMGFAETKRYMDFVSPGSQAKDGSFFGLEASFGGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAILGIFVQASVTHVGPIDNLVEHLSNPWHKTIIQTLASSSS 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04829 267 SUPERFAMILY Chlorophyll a-b binding protein 54 264 - -
Trre5g04829 267 Pfam Chlorophyll A-B binding protein 68 235 IPR022796 -
Trre5g04829 267 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 51 262 IPR001344 GO:0009765|GO:0016020
Trre5g04829 267 FunFam Chlorophyll a-b binding protein, chloroplastic 59 266 - -
Trre5g04829 267 Gene3D Chlorophyll a/b binding protein domain 60 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04829 Trre-Chr5 50079590 50081137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04829 50 262 Chloroplast and Mitochondria Gene Families AT3G61470 47.196 5.08e-62 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04829 K08911 - gmx:100804934 398.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04829 5 50079590 50081137 Trre5g04829 5 50079590 50081137 ECH