Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04794 ATGGGTAGATCTCCTTGTTGTGAGAAAGAGCACACAAACAAAGGTGCTTGGACAAAAGAAGAAGATGAACGTCTCATTAACTACATCAAACTTCACGGGGAAGGTTGTTGGAGATCTCTTCCAAAAGCTGCTGGCTTGTTGAGATGTGGCAAGAGTTGCAGATTGAGATGGATAAATTATCTCAGACCTGATCTAAAGAGGGGAAACTTCACTGAACAAGAAGATGATCTTATTATTAACCTCCACACCTTACTTGGAAATAAATGGTCGCTAATAGCTGCGAAGTTACCAGGAAGAACAGATAATGAAATCAAGAACTACTGGAACACTCACATCAAGCGAAAACTCTATAGCCGTGGAGTCGATCCCCAAACTCATCGACCACTTAACAACTCCGCGACATCCACCACCACAGTTCCACCTCCTGATACTTCAGTTTTACAATCTCAAATCACCACAAGCAATAAGAACATGATCATCGACGATATTAGCATTATTAACAGCACCAACAACAACGATAACAACGGTAATTTTCTATTGAGTGGCAATGACAATACAAAGATTAATGTAACCAAATTGGTTTCTGAAGATTCAAATTCAAATAGTAGTAGCGCCGTTAGCTCCGAGGAAACATATCATCATCAACAACTCAACTTGGACCTTTCTATCGGTCTTCCGTCATCACATACTCAAATGAACACAGACAAATTGAAGTTAGAACAACTACAAGGTAATGAGCAACAAGAAACAAAGGTTATTACAACTAGTCATGGTTTATGTCTTTGTTACAGTTTAGGGTTTCAAACCAATCAAGTGTGTTGCTGCAGCAAAACCATAGGTAATAGTATTACTAACACTGTTGCTGATAATAATATGTATAGATTTTCCGGACCCATGGATATTTAG 906 0.3874 MGRSPCCEKEHTNKGAWTKEEDERLINYIKLHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEQEDDLIINLHTLLGNKWSLIAAKLPGRTDNEIKNYWNTHIKRKLYSRGVDPQTHRPLNNSATSTTTVPPPDTSVLQSQITTSNKNMIIDDISIINSTNNNDNNGNFLLSGNDNTKINVTKLVSEDSNSNSSSAVSSEETYHHQQLNLDLSIGLPSSHTQMNTDKLKLEQLQGNEQQETKVITTSHGLCLCYSLGFQTNQVCCCSKTIGNSITNTVADNNMYRFSGPMDI 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04794 301 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre5g04794 301 CDD SANT 69 112 IPR001005 -
Trre5g04794 301 MobiDBLite consensus disorder prediction 124 144 - -
Trre5g04794 301 Gene3D - 69 116 - -
Trre5g04794 301 CDD SANT 16 61 IPR001005 -
Trre5g04794 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre5g04794 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre5g04794 301 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Trre5g04794 301 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre5g04794 301 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Trre5g04794 301 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 232 - -
Trre5g04794 301 SMART sant 13 63 IPR001005 -
Trre5g04794 301 SMART sant 66 114 IPR001005 -
Trre5g04794 301 FunFam MYB-related transcription factor 13 66 - -
Trre5g04794 301 Gene3D - 14 66 - -
Trre5g04794 301 FunFam Myb transcription factor 68 137 - -
Trre5g04794 301 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre5g04794 301 MobiDBLite consensus disorder prediction 120 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04794 Trre-Chr5 49766301 49768510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04794 1 292 MYB Transcription Factor Family AT4G38620 48.973 2.34e-88 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre5g04794 Myb_DNA-binding 4.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04794 K09422 - gmx:100808083 365.925