Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04789 ATGTCGACTTTTCACGTCGGCGGCAAGGTCGTAGACAGAGTTGATTTGCTGAGGAAGAAGCACTGGCCATGGCGCTTAGATATTTGGCCTTTCACTATTCTATACGGCGCGTGGGCTTCAACTATTCTTCCAAGCCTTGATTTCGTTGATGCTTGTATTGTTTTAGGTGCACTTGCTTCTTTTCACATTCTCGTGTGTCTCTTCACCGCTTGGTCCGTTGATTTCAAATGCTTTGCATATTATAGCAAGGTTAAAAATATTGATCAGGCTGATTCTTGCAAGATTACTCCGGCAAAATTTTGTGGTTCTAAAGAAGTAGTGCCGCTTAATTATCGGAAATCATCTGCAGGTTCTTCATCAGCAGTGGATCTGGAAGAGATTTACTTTGATTTTAGAAAACAATGTTTTGTTTATTCAAAGGAGAAGGGGACTTTTTGCAAACTTTCATACCCTACCAAGGAAACATTTCGATATTATGTCAAGAGTAGCGGTCATGGCTCCGAAGCCAAAGTTCTTGCTGCTACTGAGAAATGGGGGCGGAATGTATTTGATTATCCCCAGCCAACATTTCAAAAATTGATGAAAGAGCACTGCATGGAACCTTTTTTCGTATTTCAGGTTTTCTGTGTTGGTCTCTGGTGTTTGGATGAATATTGGTACTATAGTTTGTTTACTCTATTTATGCTGTTTATGTTTGAGTCAACCATGGCAAAAAGTCGGTTGAGGACTCTGACTGAGTTAAGACGTGTTAGAGTGGATAATCAGATCGTAATGGTTCATCGTTGTGGCAAGTGGGTAAAAATATCTGGTACAGACCTTTTGCCTGGAGATGTTGTCTCTATAGGCCGCTCTTCTGGTCAGAATGGAGAGGAAAAATCTGTACCTGCAGACATGCTTATATTGGCTGGAAGTGCAATTGTGAATGAAGCTATTCTCACAGGCGAGTCTACTCCTCAATGGAAGATTTCTATTGCGGGTAGGGGTATGGAGGAGAAGTTGTCAGCAAGGCGAGATAAAACCCATGTTTTATTTGGTGGAACTAAAATATTGCAGCACTCTCCAGATAAGACCTTTCCTCTAAAAACACCTGATGGTGGCTGCTTGGCTGTTGTCCTGCGAACGGGGTTTGAAACAAGTCAAGGAAAGTTGATGCGAACAATCTTATTCTCTACAGAAAGGGTGACTGCTAATAGCTGGGAAAGTGGATTGTTCATTTTATTCTTGGTTGTATTTGCTTTAATTGCGGCTGGTTATGTGCTTGTTAAGGGGCTAGAAGATCCCACAAGGAGCAAGTATAAACTTATACTAAGCTGTTCTCTTATTGTTACTTCTGTGATACCTCCCGAGTTACCAATGGAATTATCAATAGCTGTTAATACTTCTTTGATTGCACTGGCACGCCGTGGAATTTTTTGCACAGAACCTTTCCGGATACCATTTGCTGGGAAGGTTGATATATGTTGTTTTGACAAGACTGGGACACTTACATCTGATGACATGGAATTTTCTGGAGTTGTTGGGTTGACAGAAACTACAGATTTGGAATCTGACATGACTAGAGTGCCTGTACGAACATTAGAAATCCTGGCTTCTTGCCATGCATTGGTATTTGTTGAGAATAAACTGGTTGGTGATCCTCTTGAGAAGGCTGCACTTAAAGGAATTGATTGGAGTTATAAATCTGATGAGAAGGCTGTTCCTAAAAGGGGAAATGGCCATCCTGTCCAAATTGTTCAGCGGTATCATTTTGCATCTCACTTAAAACGAATGGCAGTTATTGTTCGTATTCAGGAGGAATTTTTTGCATTTGTGAAGGGTGCCCCAGAAATTATACAAGATAGGCTCATTAATGTACCTCCAGCATATGTTGAGACCTACAAAAGATATACACGTCAAGGGTCTCGAGTTCTTGCTCTGGCTCACAAGTCTCTTCCTGACATGACAGTCAGTGAAGCTAGAAGCTTGGATAGGGATATGGTGGAGAGTGGACTTATCTTTGCTGGTTTTGTGGTGTTTAATTGTCCCATAAGATCAGATTCGGCTACTGTTTTATCTGGATTGAAAGAATCTTCACATGACTTGGTTATGATTACTGGTGACCAAGCTTTGACGGCCTGTCATGTCGCTAGCCAAGTTCATATTATATCAAAACCAACATTAATCCTTAGTCCAGCAAGTAATGGTGAAGGATATAATTGGGTGTCCCCTGATGAGCATGAGAACATTCCCTACAGTGGGAAAGAGGTAGAATTTTTGTCAGAGACTCATGATCTATGTGTTGGAGGTGATTGCTTTGAGATGTTGCAACAGACATCAGCTCATCTTCTGGTCATTCCTTATGTTAAGGTTTTTGCTCGAGTTGCTCCTGATCAAAAGGAACTTATCTTGACTACTTTCAAAACAGTGGGACGGGTAACATTGATGTGTGGGGATGGAACCAATGACGTTGGAGCTCTGAAACAGGCCCATGTAGGAGTTGCTCTTCTGAATGCAATACCTCCAACTCAAGGGGGAAAGTCTTCTTCAGATGCATCTGGAAAGACGATTATTCCACATGGAGAAGGCACGTCAAGGTCCAGAGGTGCTTCACAATCAGACTCCACCAGCAATTCAAGAGCCAGGGTTGCTTCACAATCAGACTCCGCCAGCAATTCAAGAGCCAGAGCTGCTTCACAATCAGACTCCACCAACAATGCACCTGTTAATCGTCCTCTAACACCTGCTGAGGTTCAAAGACAGAGGCTTCAGAAGATGATGGATGAGCTTAATGAGGAAGGAGATGGCCGTGCACCCATTGTCAAGCTTGGTGATGCCTCGATGGCATCCCCATTCACTGCTAAGCATGCATCTGTTGCTCCCACCATTGACATAATTCGACAAGGTCGGAGTACCCTAGTGACAACCCTCCAGATGTTTAAAATTCTGGGTCTCAACTGCCTTTCTACTGCATATGTGTTGAGTGTTATGTATTTGGATGGTGTCAAGCTAGGTGATGTACAAGCCACAATAAGTGGTGTATTCACTGCTGCATTTTTCCTCTTTATTTCACATGCACGCCCTCTTCCCACTCTCTCAGCTGAACGTCCCCACCCCAACATCTTCTGTGCTTATGTCTTGCTTTCCCTCTTGGGACAATTTTGTGTTCACCTCTTTTTTCTGATATCATCTGTCAAAGCAGCTGAAAAATACATGCCATGTGAATGCATTGAACCAGATGCAAGTTTTCATCCCAACCTGGTTAATACCGTTTCCTACATGGTGGGCATGATGATCCAGGTGGCCACATTTGCTGTAAACTATATGGGCCATCCCTTCAACCAAAGTATTTCTGAAAATAGGCCGTTCATGTATGCCCTCGTTGCTGCTGTTGGTTTCTTTACTGTGATAACATCCGATCTCTTCAGGGATTTGAATGACTCGTTGAAGCTGGTGCCGTTGCCAAAGGGTTTGAGGGATAAACTATTGATTTGGGCTTTTCTAATGTTTTTTGTGTGCTACGCGTGGGAGAGACTGTTGAGGTGGGCCTTTCCCGGTAAAGTCCCAGCTTGGAAGAGGCGACAACAGGTTGCTGTATCTACTTTAGAAAAGAAGAAAGAGCTCTAA 3603 0.4285 MSTFHVGGKVVDRVDLLRKKHWPWRLDIWPFTILYGAWASTILPSLDFVDACIVLGALASFHILVCLFTAWSVDFKCFAYYSKVKNIDQADSCKITPAKFCGSKEVVPLNYRKSSAGSSSAVDLEEIYFDFRKQCFVYSKEKGTFCKLSYPTKETFRYYVKSSGHGSEAKVLAATEKWGRNVFDYPQPTFQKLMKEHCMEPFFVFQVFCVGLWCLDEYWYYSLFTLFMLFMFESTMAKSRLRTLTELRRVRVDNQIVMVHRCGKWVKISGTDLLPGDVVSIGRSSGQNGEEKSVPADMLILAGSAIVNEAILTGESTPQWKISIAGRGMEEKLSARRDKTHVLFGGTKILQHSPDKTFPLKTPDGGCLAVVLRTGFETSQGKLMRTILFSTERVTANSWESGLFILFLVVFALIAAGYVLVKGLEDPTRSKYKLILSCSLIVTSVIPPELPMELSIAVNTSLIALARRGIFCTEPFRIPFAGKVDICCFDKTGTLTSDDMEFSGVVGLTETTDLESDMTRVPVRTLEILASCHALVFVENKLVGDPLEKAALKGIDWSYKSDEKAVPKRGNGHPVQIVQRYHFASHLKRMAVIVRIQEEFFAFVKGAPEIIQDRLINVPPAYVETYKRYTRQGSRVLALAHKSLPDMTVSEARSLDRDMVESGLIFAGFVVFNCPIRSDSATVLSGLKESSHDLVMITGDQALTACHVASQVHIISKPTLILSPASNGEGYNWVSPDEHENIPYSGKEVEFLSETHDLCVGGDCFEMLQQTSAHLLVIPYVKVFARVAPDQKELILTTFKTVGRVTLMCGDGTNDVGALKQAHVGVALLNAIPPTQGGKSSSDASGKTIIPHGEGTSRSRGASQSDSTSNSRARVASQSDSASNSRARAASQSDSTNNAPVNRPLTPAEVQRQRLQKMMDELNEEGDGRAPIVKLGDASMASPFTAKHASVAPTIDIIRQGRSTLVTTLQMFKILGLNCLSTAYVLSVMYLDGVKLGDVQATISGVFTAAFFLFISHARPLPTLSAERPHPNIFCAYVLLSLLGQFCVHLFFLISSVKAAEKYMPCECIEPDASFHPNLVNTVSYMVGMMIQVATFAVNYMGHPFNQSISENRPFMYALVAAVGFFTVITSDLFRDLNDSLKLVPLPKGLRDKLLIWAFLMFFVCYAWERLLRWAFPGKVPAWKRRQQVAVSTLEKKKEL 1200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04789 1200 Gene3D - 484 668 IPR023299 GO:0000166
Trre5g04789 1200 Pfam E1-E2 ATPase 256 468 - -
Trre5g04789 1200 SUPERFAMILY HAD-like 483 834 IPR036412 -
Trre5g04789 1200 FunFam Cation-transporting ATPase 226 388 - -
Trre5g04789 1200 SFLD p-type atpase 469 963 IPR044492 -
Trre5g04789 1200 Pfam haloacid dehalogenase-like hydrolase 485 713 - -
Trre5g04789 1200 CDD P-type_ATPase_cation 170 1115 IPR047820 -
Trre5g04789 1200 PANTHER CATION-TRANSPORTING ATPASE-RELATED 12 1176 IPR006544 GO:0006812|GO:0016020|GO:0019829|GO:0140358
Trre5g04789 1200 Gene3D - 669 845 IPR023214 -
Trre5g04789 1200 ProSitePatterns Hypothetical cof family signature 2. 809 831 - -
Trre5g04789 1200 SFLD Haloacid Dehalogenase 469 963 - -
Trre5g04789 1200 NCBIfam P-type ATPase of unknown pump specificity (type V) 44 1157 IPR006544 GO:0006812|GO:0016020|GO:0019829|GO:0140358
Trre5g04789 1200 MobiDBLite consensus disorder prediction 834 906 - -
Trre5g04789 1200 SUPERFAMILY Calcium ATPase, transduction domain A 255 387 IPR008250 -
Trre5g04789 1200 SUPERFAMILY Calcium ATPase, transmembrane domain M 153 1177 IPR023298 -
Trre5g04789 1200 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 494 678 IPR023299 GO:0000166
Trre5g04789 1200 FunFam Cation-transporting ATPase 484 668 - -
Trre5g04789 1200 PRINTS P-type cation-transporting ATPase superfamily signature 488 502 - -
Trre5g04789 1200 PRINTS P-type cation-transporting ATPase superfamily signature 690 700 - -
Trre5g04789 1200 PRINTS P-type cation-transporting ATPase superfamily signature 308 322 - -
Trre5g04789 1200 PRINTS P-type cation-transporting ATPase superfamily signature 809 828 - -
Trre5g04789 1200 FunFam Cation-transporting ATPase 669 844 - -
Trre5g04789 1200 NCBIfam HAD-IC family P-type ATPase 403 512 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre5g04789 1200 ProSitePatterns E1-E2 ATPases phosphorylation site. 490 496 IPR018303 -
Trre5g04789 1200 Gene3D - 226 388 - -
Trre5g04789 1200 Coils Coil 905 925 - -
Trre5g04789 1200 MobiDBLite consensus disorder prediction 857 904 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04789 Trre-Chr5 49703217 49717815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04789 1 1200 Primary Pumps ATPases AT5G23630 75.576 0.0 1895
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04789 K14950 - gmx:100789385 2083.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04789 5 49703217 49717815 Trre5g04789 5 49703217 49717815 ECH