Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04788 ATGAATAAGTGGGGTGTTAATCATCAACAGGCATTCATTGGTTGGCATGGGGAAGGTGGAAGTAATTTTACTGCTGTTACTAACGAGGAAGAGGAATCAGAAAATGAGGAAGAGAAAGAACAAGAAATAACTATTAAAAATGAACCTATCTTTTTTCCAGATATTAAGAAAAGGAAGCGACTCAGCCTTAGTCAGCTTAGAGAGGGGAAAGAGGAGTCGTCTGGGAAGCTTAGTGAAGTGAAAGTGGAGTCTTGTGAGAAGTTTATTCAGCTTAGAGAGGTGAAAGAGGAGTATTGTTGGAAGGAAAGCGGTAGCAAGAAAACGAGAAAGAAGCCTGAGGCTAAGGATAGATGGTCAGGCGAGAGGTACAAGTTGGCTGAGCAAACCATGTGGGAAGTGTTGAAGGCAGAGGGTGCGACTTTTGAAAATCCGATAACCCGACCTGCACTAAGATCGGCTGCCCGTAAATTCATTGGTGATACTGGACTTTTAGACCACTTACTGAAGCACATTAATGGTAAAGTGGCCCCTGGAGGCACTGAACGGTTCCGAAGATGGTACAATACCGGTGGAATCATGGAGTATTGGTTGGAGAGTGCTGACTTGGATGATGTCCGCCAGGAGGCTGGGGTGCATGACCGCTACTGGATACCACCTTCCACTGACAGGGAAATTCGTGCCCCTTGTCAGGATACTGATTCTTCTGGTGAATTGGAATTGCTTAAAAAAGAAATGGCTCAAATGAAGAAAGATATGCAGGAGCTCGTTGCCAAGAAGGAAAAGAAAATTGAAAGTAACATGATGGAGAAGACTTGCAAGGAATTTGTGAAGTGGAAAGCTATAACTGACCATCGCCTTACTGAAATCATTGCTTCTGTGAAGAATTTGCAGGGAAATTATGGTGAATTGATGAATTGGAAAACGGAAGTGGAGAATCATCTTATGGATATAACAAATAAATTGAATGATCTTCAAGCAGCAAAAGAATGCACCACTTTTAGTCCTCCTTCAGACAAATGGAAAGATTGGTTAGAAGCCCCTGACCCTAACAGTTTTCAGGAGGATACATTGGCAACTTGGATTGGGAGTTCAAAGCTACTTAATGTTCCACAAGAGTGTTTGCCTGAATATCCGTGCGCAGGCATGCCAACACAGCCACTCAATGAAGAACCCACTAACAAGAAGAGTGATGCTGAGGAGCTGATGCCCACAATGCAAGAGGATCAAACTAATGTCACCCCAGATTCTTCTACAACTGTTAATTCAAAGGCAGACATTGACAACTCATTGATAATGTTTCAGGAGATGTTTATGGATTTATTCAAATGGAAAGAAAAAATGGAGCAGCAGCTGCTGGATGTATCAAACACTGTATATGGCATGCTAGCAATGAAGTAG 1398 0.4256 MNKWGVNHQQAFIGWHGEGGSNFTAVTNEEEESENEEEKEQEITIKNEPIFFPDIKKRKRLSLSQLREGKEESSGKLSEVKVESCEKFIQLREVKEEYCWKESGSKKTRKKPEAKDRWSGERYKLAEQTMWEVLKAEGATFENPITRPALRSAARKFIGDTGLLDHLLKHINGKVAPGGTERFRRWYNTGGIMEYWLESADLDDVRQEAGVHDRYWIPPSTDREIRAPCQDTDSSGELELLKKEMAQMKKDMQELVAKKEKKIESNMMEKTCKEFVKWKAITDHRLTEIIASVKNLQGNYGELMNWKTEVENHLMDITNKLNDLQAAKECTTFSPPSDKWKDWLEAPDPNSFQEDTLATWIGSSKLLNVPQECLPEYPCAGMPTQPLNEEPTNKKSDAEELMPTMQEDQTNVTPDSSTTVNSKADIDNSLIMFQEMFMDLFKWKEKMEQQLLDVSNTVYGMLAMK 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04788 465 Coils Coil 26 48 - -
Trre5g04788 465 PANTHER PROTEIN DYAD 1 463 IPR044221 GO:0007131|GO:0051177|GO:0051321
Trre5g04788 465 Coils Coil 307 327 - -
Trre5g04788 465 Coils Coil 238 265 - -
Trre5g04788 465 MobiDBLite consensus disorder prediction 16 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04788 Trre-Chr5 49691064 49693081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04788 117 198 PHD Transcription Factor Family AT5G22260 39.759 2.01e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04788 - - gmx:100806484 599.742