Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04756 ATGGATCCTGACGCATTCACTGCTAGTTTATTCAAGTGGGACCCACGTAACGTTCTTTCAACTGCTGCACCATCTCCTCGTCCTCAACTTCTTGACTACACAGTCACTCCTTCAGCTCCATCAGTGACTTATCATCCAGCAAGGTTACCAAGGGAGCTTGGTGGCTTGGAAGAACTGTTCCAAGCTTATGGTATAAGATACTACACGGCGGCGAAGATAGCTGAGCTTGGTTTCACTGTGAGTACTCTGGTGAACATGAAAGATGATGAGCTGGATGACATGATGAACAGTCTATCTCAGATTTTTCGTTGGGATCTTCTTGTTGGTGAAAGATATGGAATCAAAGCTTCCATTAGAGCTGAAAGAAGAAGACTTGATGAAGAGGAAATGAAACGCCGTGGTCTTATGTCTGTTGATACCACCAATGCTCTTGATGCTCTCTCTCAAGAAGGTTTGTCGGAGGAGCCGGTGGTGCAACGAGAAAAGGAGGCGGTAGGGAGTGGAGGAGGAAGTACATGGGAGGTAGCTGTGGTGGAGGAAAGGCGAAAGAGGCAGCAGATAAGGAGGAGGAGGATGAAGATGAAGGGAAATCTTGATCATGGTGAGAATGAAGACGGAGAAGAGGACGATGAAGATAACAACAGTGGTGGTGGTGGTGGTGGTGAGAGACAAAGAGAACATCCATTCATTGTTACAGAGCCAGGAGAAGTTGCACGTGGCAAAAAGAACGGTCTGGATTATCTGTTTCATCTCTATGAACAATGTCGTGAGTTTCTTATTCAAGTTCAAGCTATAGCCAAAGAACGCGGTGAGAAATGTCCTACAAAGGTAACAAATCAGGTATTTAGGTACGCGAAGAAAGCTGGAGCAAGCTACATAAACAAGCCGAAAATGAGACACTACGTGCACTGCTATGCATTGCATTGTTTAGATGAGGAAGTTTCCAATGAGCTGAGAAGGGGTTTCAAGGAAAGAGGGGAGAACGTCGGCGCGTGGAGGCAAGCTTGTTACAAGCCATTAGTGGCGATTGCTGCACGTCAAGGATGGGATATTGATGCAATATTTAACGCGCATCCGCGTCTTTCCATATGGTATGTGCCAACCAAACTCCGTCAGCTTTGTCACGCCGAGAGAAACGGTGCTGGTGCTTCGAGCTCCGTCTCTGTTGGAACAACCCACCTTCCTTTCTAA 1191 0.4668 MDPDAFTASLFKWDPRNVLSTAAPSPRPQLLDYTVTPSAPSVTYHPARLPRELGGLEELFQAYGIRYYTAAKIAELGFTVSTLVNMKDDELDDMMNSLSQIFRWDLLVGERYGIKASIRAERRRLDEEEMKRRGLMSVDTTNALDALSQEGLSEEPVVQREKEAVGSGGGSTWEVAVVEERRKRQQIRRRRMKMKGNLDHGENEDGEEDDEDNNSGGGGGGERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQAIAKERGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEVSNELRRGFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHPRLSIWYVPTKLRQLCHAERNGAGASSSVSVGTTHLPF 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04756 396 MobiDBLite consensus disorder prediction 148 170 - -
Trre5g04756 396 Pfam Floricaula / Leafy protein SAM domain 52 129 IPR035079 -
Trre5g04756 396 PANTHER PROTEIN LEAFY 1 395 IPR002910 GO:0003677|GO:0006355
Trre5g04756 396 Gene3D Protein LEAFY 219 388 IPR038276 -
Trre5g04756 396 MobiDBLite consensus disorder prediction 186 233 - -
Trre5g04756 396 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 216 381 IPR035209 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04756 Trre-Chr5 49403925 49406558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04756 1 390 Orphan Transcription Factor Family AT5G61850 64.303 4.67e-160 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LFY Trre5g04756 C_LFY_FLO 7.7e-110 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04756 - - gsj:114416001 621.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04756 5 49403925 49406558 Trre5g04756 5 49403925 49406558 ECH