Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04755 ATGGATAAGAGGAGAGAATCATGGGAAGAAGAGGGAAAAGAAGATGAGAATTTGTTTCCAGTTTTTTCTGAAAGATCTCAGCAAGATATGTCAGCTATAGTATCAGCACTTACACAAGTTATGGGTGGTAACAACAATACTGAAATGCATGAAGCTTCTTCAATTCATAATATTACTCAACAATCTCAACTACCACAACAAGATCAAGGGAGTGTAAGAAAAAGACACTATAGAGGTGTGAGGCAGAGACCATGGGGAAAATGGGCTGCAGAGATTCGCGATCCGAAGAAAGCAGCAAGAGTATGGCTAGGAACCTTTGAAACTGCTGAAGCTGCTGCTATTGCCTATGATGAAGCTGCACTCAGATTCAAAGGAAGCAAAGCTAAGCTCAATTTTCCTGAAAGAGTTCAAAGTTCAGCAGAATTTGGATATAACCAAGAATTTCATCACCTAGTTTCAAACACAAGTAATAACATGCAACAATCTAACCAACAAGTTCCTCTTCCACACTTTTCTCAAGAAACATATTCAAATCCTTATCAATATGCTGCACAAGCACAACTTCAAGCTAGTGGCAGTAGTAACTTCAATCAGGATATGCTTGGTTTCTATGGGAGAGATATGTTTGTTTCTAACTCTAATTCTCAGCCTTTAATATCAACTACATCTTCATCTTCATCTTCATCCTCGTCTTCTGGATTATCTCAGCAACAACAAGAGTTTTTGAGATTGTCGATGCAATTCGGAGGTTCTTCTTCCTCTTCTTCCGCTTATGACCCTCCGAGGAATTGGGGTGATGGAAGGGATGGGAAACAATGA 819 0.3944 MDKRRESWEEEGKEDENLFPVFSERSQQDMSAIVSALTQVMGGNNNTEMHEASSIHNITQQSQLPQQDQGSVRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEAAAIAYDEAALRFKGSKAKLNFPERVQSSAEFGYNQEFHHLVSNTSNNMQQSNQQVPLPHFSQETYSNPYQYAAQAQLQASGSSNFNQDMLGFYGRDMFVSNSNSQPLISTTSSSSSSSSSSGLSQQQQEFLRLSMQFGGSSSSSSAYDPPRNWGDGRDGKQ 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04755 272 SUPERFAMILY DNA-binding domain 76 134 IPR016177 GO:0003677
Trre5g04755 272 MobiDBLite consensus disorder prediction 215 260 - -
Trre5g04755 272 CDD AP2 76 134 IPR001471 GO:0003700|GO:0006355
Trre5g04755 272 PRINTS Ethylene responsive element binding protein signature 99 115 IPR001471 GO:0003700|GO:0006355
Trre5g04755 272 PRINTS Ethylene responsive element binding protein signature 77 88 IPR001471 GO:0003700|GO:0006355
Trre5g04755 272 ProSiteProfiles AP2/ERF domain profile. 76 133 IPR001471 GO:0003700|GO:0006355
Trre5g04755 272 FunFam Ethylene-responsive transcription factor 2 75 134 - -
Trre5g04755 272 PANTHER DNA-BINDING DOMAIN 46 223 IPR044808 GO:0003700|GO:0009873
Trre5g04755 272 Gene3D AP2/ERF domain 75 135 IPR036955 GO:0003700|GO:0006355
Trre5g04755 272 SMART rav1_2 76 139 IPR001471 GO:0003700|GO:0006355
Trre5g04755 272 MobiDBLite consensus disorder prediction 215 272 - -
Trre5g04755 272 Pfam AP2 domain 76 125 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04755 Trre-Chr5 49380658 49381940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04755 17 137 AP2-EREBP Transcription Factor Family AT5G61890 68.702 2.48e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre5g04755 AP2 1.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04755 - - gmx:100787091 246.128
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04755 5 49380658 49381940 Trre5g04755 5 49380658 49381940 ECH