Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04750 ATGAATCAGAGGGGTGTTACTGCTTCATCCCATCTTTATGATGATGTTTCCTATGCTTCTGAGAGAAATGATGGATTACGGAAGCCGGAGTCTGTTCATGATGATCATCCACAAGGAAAGGGTGAAATTGCAGCTTCACCTGGAGGCATTTTGCATACTTCATCAACCCTCGAAAGAAATGCAAAAAATGGCTTGCACATGTCACAGACTAGTCTATCTGGGGAAATTTCAGAAAACCTACACTTTGGTGGACAAGCTGGCATTGTAGATGTGCTGAAGGATTCAAAGGAATCGTTGAATCATCATCCAAGATCATGGTCTGATGTGCATAGGCAGCCAGCATCTAGCTCGTATGGTTTAATTGGGAACAAGGTTTTCACCAATGCAGGCTCACGTGAAAGTAGTCTATTCTCAAGCTCACTGTCCGATATGTTTAGCCAAAAGCTGAGGTTATTGGGAAACGGTGGTCTGTCTGATCAGAACATTAATGTTGGTTTTCTTCCTGAGGAAGAACCATACAAATCTCTTGAAGAAATTGAGGCTGACACTATAGGAGATCTCCTTCCTGACGAAGATGATCTGTTTTCTGGTGTCACTGATGCTTTAGGAAGCAGTGCTCATGCCAAACCAACTGATGATTTTGAAGATTTTGATTTGTTCAGCAGTGGTGGAGGCATGGAGTTGGAAGGAGACGAACTTCTAGTTTCAGGAAAAAGAATCAGTGGCTTGGAATTGGATGGAGATTCTGCTTACTTTGGGGGTTCTAAAGGCAAAAGTCCTTTTGGTGAACAATCTTCTAGAACACTTTTTGTTAGAAACATTACTAGCAATGAAGAAGACTCGGATATAAAGGCTCTATTTGAGCAATATGGAGATATCCGAACCATTTATACTGCCTCCAAGCATCAAGGGTTTGTGATGGTTTCATATTATGACCTAAGGGCTGCACAAAATGCAATGAAAGCACTTCAAAATAGGTCATTGAATTCTAGGAATCTGGATATACATTATTCATTTCCAAAGGGAAATGCTTCAGAGAAGGATATTAGCCACGGTACACTGATGATATCTGGTCTTGACCCATCTGTTTTGAAAGAGGAACTAAAACATATTTTTGGGTTTTATGGAGAAATCAAAGAAATCTATGAATATCCAGAAATGAATCATATCAAATATATTGAATTTTATGATGTTCGAGGTGCAGAAGCTTCTCTCCGTTCATTGAATGGGATCTGCATTGCTGGGAAGCACATCAAGCTTGAACCTGGCCATCCTAAGAATGCAACACGTATGATGAAGCCGTCTCAAAAGGCACAAGACGAATCCGATCTTGGTCATAATCTCAATGACATCTTATTTTTAAGACAGAAGGGAGTGTCTTCTGGAGTTATTGCATCTGGTGGAAGCTTGGAAAATGGATATAATCATAGATTCCAATCTGCATCACAGTTGCCTTTGAATGCTTTCATTGATAACACAATTTTTCATAGTATTTCCAACACTGCAAGAGGGGCATCTGCTGTAGCAGTATCTGGTGCTCGTGAGTCCAGTAACGCTGTTGATGCAATGAAATTTGCATCTATTCCAAGATTCCACCCTCATTCTTTGCCTGAGTATCGTGATGGTTTAGCTAATGGTAGTCCTTACAATTTGTCAAATACCATTAAAATGGCTGCCAATATTGGAAGTGGATCCACAGAAGCATCTGACAGAAGGCACATTCAGGGAATGAGCTCAACTGGGAACTTAGCAGAATTTAATGCAGGAGGAAATGGGAGTCTTCCTCACCATCAGCTTTATCATATGTGGAATGGCTCAAACTTGCGTCAGCAATCTCCATCAAATGCTATGGTTTGGCAGAAATCGCCATCTTTTGTTAATGGTGCTGGTGCTCCAGGTCTTCCACAGATGCCCAGCTTTCCCAGGACACCGGCTCATGTGCTGAGAGCATCACATATAGACCACCATGTTGGATCAGCACCAGTTGTTACCGGATCACCCTGGGAAAGACAACATTCGTACTTGGGAGAGTCTCCTGAAGCTCCTGGTTTTAGACTGGGTTCTCTAGGAAATGCAGGTTTTCATGGTAGCTGGCAGTTGCATCCTCCAGATCTCTCTAGCAACATGTTTTCTCATGTTGGCGGGAATGTTAATGATTTGACATCCAGTGTTGGGCAGGGCTCTCCTAAGCAGTTGTCGCATGTCTTCCCTGGGAGACTTCCCATGACTTCAATGTCAAAATTTGATTCTACCAATGAACGAATGAGAAATCTCTATCATCGTCGAAGTGAAGCAAACAATAACAATGCTGATAAAAAACAATATGAACTCGACCTTGGCCGCATATTGCGTGGGGAAGACAACAGAACAACACTTATGATAAAAAATATTCCCAACAAGTATACTTCAAAGATGCTTCTTACAGCCATAGATGAGAGTTGTCGGGGAACTTATGATTTTCTGTATTTGCCAATTGATTTCAAGAACAAATGTAATGTCGGCTATGCATTCATCAATATGACTGATCCTGGTCAAATAATTCCATTCCACCAGGCTTTTCACGGGAAAAAATGGGAGAAGTTTAACAGTGAAAAGGTAGCCGTACTTGCATATGCCCGAATTCAAGGAAAATCTGCTCTTATTGCTCATTTCCAGAATTCAAGTCTGATGAACGAAGATAAACGTTGCCGCCCTATTCTATTCCATACAGATGGTCCAAATGCCGGTGATCCGGAGCCTTTCCCCTTGGGCGCCAATGTTAGAGTAAGGCCTGGAAAGTTACGTAATTGTGGCAGCGAGGAGAATCGTATTCAAGGGAATTCTTCAACTTTGGCAAGTGCGGAAGAGTTTGCTAGCGGAATACATTCTTCACCAAGTTCTTCAAGAGACACTGACTGA 2898 0.4182 MNQRGVTASSHLYDDVSYASERNDGLRKPESVHDDHPQGKGEIAASPGGILHTSSTLERNAKNGLHMSQTSLSGEISENLHFGGQAGIVDVLKDSKESLNHHPRSWSDVHRQPASSSYGLIGNKVFTNAGSRESSLFSSSLSDMFSQKLRLLGNGGLSDQNINVGFLPEEEPYKSLEEIEADTIGDLLPDEDDLFSGVTDALGSSAHAKPTDDFEDFDLFSSGGGMELEGDELLVSGKRISGLELDGDSAYFGGSKGKSPFGEQSSRTLFVRNITSNEEDSDIKALFEQYGDIRTIYTASKHQGFVMVSYYDLRAAQNAMKALQNRSLNSRNLDIHYSFPKGNASEKDISHGTLMISGLDPSVLKEELKHIFGFYGEIKEIYEYPEMNHIKYIEFYDVRGAEASLRSLNGICIAGKHIKLEPGHPKNATRMMKPSQKAQDESDLGHNLNDILFLRQKGVSSGVIASGGSLENGYNHRFQSASQLPLNAFIDNTIFHSISNTARGASAVAVSGARESSNAVDAMKFASIPRFHPHSLPEYRDGLANGSPYNLSNTIKMAANIGSGSTEASDRRHIQGMSSTGNLAEFNAGGNGSLPHHQLYHMWNGSNLRQQSPSNAMVWQKSPSFVNGAGAPGLPQMPSFPRTPAHVLRASHIDHHVGSAPVVTGSPWERQHSYLGESPEAPGFRLGSLGNAGFHGSWQLHPPDLSSNMFSHVGGNVNDLTSSVGQGSPKQLSHVFPGRLPMTSMSKFDSTNERMRNLYHRRSEANNNNADKKQYELDLGRILRGEDNRTTLMIKNIPNKYTSKMLLTAIDESCRGTYDFLYLPIDFKNKCNVGYAFINMTDPGQIIPFHQAFHGKKWEKFNSEKVAVLAYARIQGKSALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGANVRVRPGKLRNCGSEENRIQGNSSTLASAEEFASGIHSSPSSSRDTD 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04750 965 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 269 333 IPR000504 GO:0003723
Trre5g04750 965 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 354 419 IPR000504 GO:0003723
Trre5g04750 965 SMART rrm1_1 268 336 IPR000504 GO:0003723
Trre5g04750 965 SMART rrm1_1 791 869 IPR000504 GO:0003723
Trre5g04750 965 SMART rrm1_1 353 421 IPR000504 GO:0003723
Trre5g04750 965 SUPERFAMILY RNA-binding domain, RBD 791 876 IPR035979 GO:0003676
Trre5g04750 965 CDD RRM3_MEI2_like 792 877 IPR034454 -
Trre5g04750 965 CDD RRM1_MEI2_like 266 341 IPR034453 -
Trre5g04750 965 FunFam Protein MEI2-like 1 351 445 - -
Trre5g04750 965 Gene3D - 259 346 IPR012677 -
Trre5g04750 965 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 352 425 IPR000504 GO:0003723
Trre5g04750 965 MobiDBLite consensus disorder prediction 17 40 - -
Trre5g04750 965 MobiDBLite consensus disorder prediction 927 965 - -
Trre5g04750 965 MobiDBLite consensus disorder prediction 1 16 - -
Trre5g04750 965 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 267 340 IPR000504 GO:0003723
Trre5g04750 965 MobiDBLite consensus disorder prediction 1 50 - -
Trre5g04750 965 Pfam RNA recognition motif 2 789 885 IPR007201 -
Trre5g04750 965 SUPERFAMILY RNA-binding domain, RBD 264 427 IPR035979 GO:0003676
Trre5g04750 965 Gene3D - 347 446 IPR012677 -
Trre5g04750 965 Gene3D - 783 875 IPR012677 -
Trre5g04750 965 PANTHER RNA RECOGNITION MOTIF-CONTAINING 105 961 - -
Trre5g04750 965 MobiDBLite consensus disorder prediction 933 965 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04750 Trre-Chr5 49338488 49344041 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04750 262 426 Eukaryotic Initiation Factors Gene Family AT3G16380 23.118 5.15e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04750 - - gmx:100797616 1457.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04750 5 49338488 49344041 Trre5g04750 5 49338488 49344041 ECH
Trre7g05317 7 59374270 59379762 Trre5g04750 5 49338488 49344041 PCT