Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04749 ATGCCTTTTGAAATAATGAATCAGAGGGGTGTTACTGCTTCATCCCATCTTTATGATGATGTTTCCTATGCTTCTGAGAGAAATGATGGATTACGGAAGCCGGAGTCTGTTCATGATGATCATCCACAAGGAAAGGGTGAAATTGCAGCTTCACCTGGAGGCATTTTGCATACTTCATCAACCCTCGAAAGAAATGCAAAAAATGGCTTGCACATGTCACAGACTAGTCTATCTGGGGAAATTTCAGAAAACCTACACTTTGGTGGACAAGCTGGCATTGTAGATGTGCTGAAGGATTCAAAGGAATCGTTGAATCATCATCCAAGATCATGGTCTGATGTGCATAGGCAGCCAGCATCTAGCTCGTATGGTTTAATTGGGAACAAGGTTTTCACCAATGCAGGCTCACGTGAAAGTAGTCTATTCTCAAGCTCACTGTCCGATATGTTTAGCCAAAAGCTGAGGTTATTGGGAAACGGTGGTCTGTCTGATCAGAACATTAATGTTGGTTTTCTTCCTGAGGAAGAACCATACAAATCTCTTGAAGAAATTGAGGCTGACACTATAGGAGATCTCCTTCCTGACGAAGATGATCTGTTTTCTGGTGTCACTGATGCTTTAGGAAGCAGTGCTCATGCCAAACCAACTGATGATTTTGAAGATTTTGATTTGTTCAGCAGTGGTGGAGGCATGGAGTTGGAAGGAGACGAACTTCTAGTTTCAGGAAAAAGAATCAGTGGCTTGGAATTGGATGGAGATTCTGCTTACTTTGGGGGTTCTAAAGGCAAAAGTCCTTTTGGTGAACAATCTTCTAGAACACTTTTTGTTAGAAACATTACTAGCAATGAAGAAGACTCGGATATAAAGGCTCTATTTGAGCAATATGGAGATATCCGAACCATTTATACTGCCTCCAAGCATCAAGGGTTTGTGATGGTTTCATATTATGACCTAAGGGCTGCACAAAATGCAATGAAAGCACTTCAAAATAGGTCATTGAATTCTAGGAATCTGGATATACATTATTCATTTCCAAAGGGAAATGCTTCAGAGAAGGATATTAGCCACGGTACACTGATGATATCTGGTCTTGACCCATCTGTTTTGAAAGAGGAACTAAAACATATTTTTGGGTTTTATGGAGAAATCAAAGAAATCTATGAATATCCAGAAATGAATCATATCAAATATATTGAATTTTATGATGTTCGAGGTGCAGAAGCTTCTCTCCGTTCATTGAATGGGATCTGCATTGCTGGGAAGCACATCAAGCTTGAACCTGGCCATCCTAAGAATGCAACACGTATGATGAAGCCGTCTCAAAAGGCACAAGACGAATCCGATCTTGGTCATAATCTCAATGACATCTTATTTTTAAGACAGAAGGGAGTGTCTTCTGGAGTTATTGCATCTGGTGGAAGCTTGGAAAATGGATATAATCATAGATTCCAATCTGCATCACAGTTGCCTTTGAATGCTTTCATTGATAACACAATTTTTCATAGTATTTCCAACACTGCAAGAGGGGCATCTGCTGTAGCAGTATCTGGTGCTCGTGAGTCCAGTAACGCTGTTGATGCAATGAAATTTGCATCTATTCCAAGATTCCACCCTCATTCTTTGCCTGAGTATCGTGATGGTTTAGCTAATGGTAGTCCTTACAATTTGTCAAATACCATTAAAATGGCTGCCAATATTGGAAGTGGATCCACAGAAGCATCTGACAGAAGGCACATTCAGGGAATGAGCTCAACTGGGAACTTAGCAGAATTTAATGCAGGAGGAAATGGGAGTCTTCCTCACCATCAGCTTTATCATATGTGGAATGGCTCAAACTTGCGTCAGCAATCTCCATCAAATGCTATGGTTTGGCAGAAATCGCCATCTTTTGTTAATGGTGCTGGTGCTCCAGGTCTTCCACAGATGCCCAGCTTTCCCAGGACACCGGCTCATGTGCTGAGAGCATCACATATAGACCACCATGTTGGATCAGCACCAGTTGTTACCGGATCACCCTGGGAAAGACAACATTCGTACTTGGGAGAGTCTCCTGAAGCTCCTGGTTTTAGACTGGGTTCTCTAGGAAATGCAGGTTTTCATGGTAGCTGGCAGTTGCATCCTCCAGATCTCTCTAGCAACATGTTTTCTCATGTTGGCGGGAATGTTAATGATTTGACATCCAGTGTTGGGCAGGGCTCTCCTAAGCAGTTGTCGCATGTCTTCCCTGGGAGACTTCCCATGACTTCAATGTCAAAATTTGATTCTACCAATGAACGAATGAGAAATCTCTATCATCGTCGAAGTGAAGCAAACAATAACAATGCTGATAAAAAACAATATGAACTCGACCTTGGCCGCATATTGCGTGGGGAAGACAACAGAACAACACTTATGATAAAAAATATTCCCAACAAGTATACTTCAAAGATGCTTCTTACAGCCATAGATGAGAGTTGTCGGGGAACTTATGATTTTCTGTATTTGCCAATTGATTTCAAGAACAAATGTAATGTCGGCTATGCATTCATCAATATGACTGATCCTGGTCAAATAATTCCATTCCACCAGGCTTTTCACGGGAAAAAATGGGAGAAGTTTAACAGTGAAAAGGTAGCCGTACTTGCATATGCCCGAATTCAAGGAAAATCTGCTCTTATTGCTCATTTCCAGAATTCAAGTCTGATGAACGAAGATAAACGTTGCCGCCCTATTCTATTCCATACAGATGGTCCAAATGCCGGTGATCCGGAGCCTTTCCCCTTGGGCGCCAATGTTAGAGTAAGGCCTGGAAAGTTACGTAATTGTGGCAGCGAGGAGAATCGTATTCAAGGGAATTCTTCAACTTTGGCAAGTGCGGAAGAGTTTGCTAGCGGAATACATTCTTCACCAAGTTCTTCAAGAGACACTGACTGA 2913 0.4174 MPFEIMNQRGVTASSHLYDDVSYASERNDGLRKPESVHDDHPQGKGEIAASPGGILHTSSTLERNAKNGLHMSQTSLSGEISENLHFGGQAGIVDVLKDSKESLNHHPRSWSDVHRQPASSSYGLIGNKVFTNAGSRESSLFSSSLSDMFSQKLRLLGNGGLSDQNINVGFLPEEEPYKSLEEIEADTIGDLLPDEDDLFSGVTDALGSSAHAKPTDDFEDFDLFSSGGGMELEGDELLVSGKRISGLELDGDSAYFGGSKGKSPFGEQSSRTLFVRNITSNEEDSDIKALFEQYGDIRTIYTASKHQGFVMVSYYDLRAAQNAMKALQNRSLNSRNLDIHYSFPKGNASEKDISHGTLMISGLDPSVLKEELKHIFGFYGEIKEIYEYPEMNHIKYIEFYDVRGAEASLRSLNGICIAGKHIKLEPGHPKNATRMMKPSQKAQDESDLGHNLNDILFLRQKGVSSGVIASGGSLENGYNHRFQSASQLPLNAFIDNTIFHSISNTARGASAVAVSGARESSNAVDAMKFASIPRFHPHSLPEYRDGLANGSPYNLSNTIKMAANIGSGSTEASDRRHIQGMSSTGNLAEFNAGGNGSLPHHQLYHMWNGSNLRQQSPSNAMVWQKSPSFVNGAGAPGLPQMPSFPRTPAHVLRASHIDHHVGSAPVVTGSPWERQHSYLGESPEAPGFRLGSLGNAGFHGSWQLHPPDLSSNMFSHVGGNVNDLTSSVGQGSPKQLSHVFPGRLPMTSMSKFDSTNERMRNLYHRRSEANNNNADKKQYELDLGRILRGEDNRTTLMIKNIPNKYTSKMLLTAIDESCRGTYDFLYLPIDFKNKCNVGYAFINMTDPGQIIPFHQAFHGKKWEKFNSEKVAVLAYARIQGKSALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGANVRVRPGKLRNCGSEENRIQGNSSTLASAEEFASGIHSSPSSSRDTD 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04749 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 272 345 IPR000504 GO:0003723
Trre5g04749 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 357 430 IPR000504 GO:0003723
Trre5g04749 970 MobiDBLite consensus disorder prediction 932 970 - -
Trre5g04749 970 SUPERFAMILY RNA-binding domain, RBD 269 432 IPR035979 GO:0003676
Trre5g04749 970 PANTHER RNA RECOGNITION MOTIF-CONTAINING 110 966 - -
Trre5g04749 970 SMART rrm1_1 358 426 IPR000504 GO:0003723
Trre5g04749 970 SMART rrm1_1 273 341 IPR000504 GO:0003723
Trre5g04749 970 SMART rrm1_1 796 874 IPR000504 GO:0003723
Trre5g04749 970 Gene3D - 788 880 IPR012677 -
Trre5g04749 970 CDD RRM3_MEI2_like 797 882 IPR034454 -
Trre5g04749 970 CDD RRM1_MEI2_like 271 346 IPR034453 -
Trre5g04749 970 Gene3D - 264 351 IPR012677 -
Trre5g04749 970 MobiDBLite consensus disorder prediction 938 970 - -
Trre5g04749 970 SUPERFAMILY RNA-binding domain, RBD 796 881 IPR035979 GO:0003676
Trre5g04749 970 MobiDBLite consensus disorder prediction 25 55 - -
Trre5g04749 970 Gene3D - 352 451 IPR012677 -
Trre5g04749 970 MobiDBLite consensus disorder prediction 25 45 - -
Trre5g04749 970 Pfam RNA recognition motif 2 794 890 IPR007201 -
Trre5g04749 970 FunFam Protein MEI2-like 1 356 450 - -
Trre5g04749 970 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 274 338 IPR000504 GO:0003723
Trre5g04749 970 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 359 424 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04749 Trre-Chr5 49338473 49344041 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04749 267 431 Eukaryotic Initiation Factors Gene Family AT3G16380 23.118 4.60e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04749 - - gmx:100797616 1464.9