Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04743 ATGAATTTTGCAAAACTCAACGATTCTCCCATGTTTCGTCAACAGCTTCAGAGTTTGGAAGAAAGTTCAGAATCGTTACGTTCCAGATGTTGGAAGTTCTATAAAGGATGTAGAAAATACACGGAAGGGCTAGGAGAGGCATATGATGGAGACATTGGATTTGCAACTGCCCTTGAAAATTTTGGAGGAGGCCATAGTGACCCTCTTTTTGTAACTTTGGGAGGACCTGTAATGACCAAATTCGCTATTGCTTTGAGAGAAATCAGTACACACAAGGAACTTCTTCGGTCACAGGTCGAGCATATGCTGAATGACCGGTTACTGAACATCCTAAATGTCGAAATCCTTGATGTCAAGGAAGCTCGGAGGCGTTTTGATAAAGCTTCCCAAGTATATGATCAGGCACGTGAGAAGTTTATGTCATTGAGAAAAAGCACCAAGTTTGATGTTGCAGCTGTGATAGAAGAGGAATTGCACAATGCAAGAACAATATTCGAGGAAGCTCGTTTCAATCTGGTTGGTGCTCTTCATAATATTGAGGCAAAGAAGAGATTTGAGTTTTTGGAGGCCGTCACTGGAGTTATGGACGCTCATCTTCGATACTTTCAACAGGGATATCAGCAGTTACAAGAGCTGGAGCCTTTCATTATTGAGGTTTTGGCTTATGCACAAAAGGCAAGAGAAAGTTACAATGAAGAGCAGATTTCTCTTTGTGAAAGAATGGTAGAGTACAAAAAACAAAGTTACCAAGAAAGTCGATTGTCCTTGAATGGCCCTTATGGCTCTCCCAGTGCAGACAATGCGCATATGCATCCTTTTTCTCGGATATCAAGTAGTGTGATAGATGCAGTAGCTGAATCAGCTGCAAATGGAAAGGTTCGAGTCATTCGACAAGGGTATCTTTCAAAACGTTCCTCGAATTTGAGGGGAGACTGGAAGAGAAGATTTTTTGTTCTTGATAGCCTCGGAACGCTTTACTACTACCGTAAACCATTACAAGTAAATAGTTTTAATCAGCAATGTACACAGAGGAATTGCGCCAATGAAAACAGTGCTGGCATTCTGAGTAGGTTACTTTCTTCACAATACCATGTAGTTGTTCCTGATGAAAAATCTGTAGCTCGTCACACGGTGAACCTGCTCACATCAACAATCAAGATTGATGCTGAGCAATCAGATTTAAGGTTCTGCTTCAGGATTATTTCACCCTCAAAGATGTATACTTTGCAGGCAGAAAATGCCCTTGACCAGATGGATTGGATGGAAAAAATAAACGGAGTCATTGCGTCTTTGTTGTCTGTACAAACACTAGGTGTACAGTATAAATCAGCTGACTCAGAAAGCTGTGACAGCGACTCTTCCAACAACACCGACTCATTACAAAGTTTACAAGACCATGATCAATTAATGAGCGGAGAATTTGCACCAAAGAACTCCGCCATCAATAAATCGTCTGAAAAACCATCTGAAGACTTGCAGAAGAATAAGCAGTGTGTAAAAGTTGAACAGCCAATTGATATTCTAAGAAAGGTTAGCGGGAATGATAAATGTGCCGATTGCGGTAAACCTGAACCAGACTGGGCATCCTTAAACCTTGGTATCCTTGTATGCATTGAATGTTCCGGCATTCACCGTAATCTTGGTGTACATAAATCAAAAGTACGGTCACTGAAACTTGATGTTAAAGTGTGGGATTCCTCCGTCTTAACTATGTTTCAGTCACTAGGAAATCTCTTTGCGAACTCGGTTTGGGAGGAGCTTTTGCATGCAGCAACAAGTACTTCACAAACTGATGACACTCCTTACGGTTCATCCAAATCCGATAAAAACAAGTTAGGTTATGCAAAAAAACCAGAACTTGATGATCCTATTTCAATAAAGGAAAGATTCATTCATGCAAAGTATTCGGAGAAATTCTTTGTTCGACAGGTGTCAAAAAGTCACCACCTTCTTTCGGTGGCACAACAAGTGATGGAATGCATCTGTGCCAATGACAAGAAAGCAGTGTACCGGCACATTGTGAAATCAGATGTGGATATCAATTCTGTTAGTGGAGACATAATATCCGGCTATTTTTCTAATATGTCGTCTTCAAGTGATTCAAACAAATCTTCTACAAGTAAAACTCAGATAATGGAGGACATGCACGAAGGTTCTAGTGTGCTTCACTTGGCTTGCCTAACAAGTGATGCTGGAATGATAGAGCTTCTTCTACAGTACGGCGCAGATGTAAATGCTATTGATTCAAGAGGTAGGACACCGCTGCATTACTGCATTTTGAGAGGAAAGACGGCAGCTGCCAGATTGTTTATTACAAGGGGGGCCAATCCACTTGCCGTAGATAAATACGGCAACACTCCTCTTATGCTTGCACCAGAACCCGGGGCTATTGGCAAAGACATTCTTGCTCTCTTATCAAGCAGATGA 2427 0.4129 MNFAKLNDSPMFRQQLQSLEESSESLRSRCWKFYKGCRKYTEGLGEAYDGDIGFATALENFGGGHSDPLFVTLGGPVMTKFAIALREISTHKELLRSQVEHMLNDRLLNILNVEILDVKEARRRFDKASQVYDQAREKFMSLRKSTKFDVAAVIEEELHNARTIFEEARFNLVGALHNIEAKKRFEFLEAVTGVMDAHLRYFQQGYQQLQELEPFIIEVLAYAQKARESYNEEQISLCERMVEYKKQSYQESRLSLNGPYGSPSADNAHMHPFSRISSSVIDAVAESAANGKVRVIRQGYLSKRSSNLRGDWKRRFFVLDSLGTLYYYRKPLQVNSFNQQCTQRNCANENSAGILSRLLSSQYHVVVPDEKSVARHTVNLLTSTIKIDAEQSDLRFCFRIISPSKMYTLQAENALDQMDWMEKINGVIASLLSVQTLGVQYKSADSESCDSDSSNNTDSLQSLQDHDQLMSGEFAPKNSAINKSSEKPSEDLQKNKQCVKVEQPIDILRKVSGNDKCADCGKPEPDWASLNLGILVCIECSGIHRNLGVHKSKVRSLKLDVKVWDSSVLTMFQSLGNLFANSVWEELLHAATSTSQTDDTPYGSSKSDKNKLGYAKKPELDDPISIKERFIHAKYSEKFFVRQVSKSHHLLSVAQQVMECICANDKKAVYRHIVKSDVDINSVSGDIISGYFSNMSSSSDSNKSSTSKTQIMEDMHEGSSVLHLACLTSDAGMIELLLQYGADVNAIDSRGRTPLHYCILRGKTAAARLFITRGANPLAVDKYGNTPLMLAPEPGAIGKDILALLSSR 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04743 808 Pfam BAR domain of APPL family 6 233 IPR004148 GO:0005515|GO:0005737
Trre5g04743 808 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Trre5g04743 808 SMART ANK_2a 750 779 IPR002110 GO:0005515
Trre5g04743 808 SMART ANK_2a 717 746 IPR002110 GO:0005515
Trre5g04743 808 CDD BAR_SFC_plant 15 215 IPR035670 -
Trre5g04743 808 SMART arf_gap_3 502 648 IPR001164 GO:0005096
Trre5g04743 808 CDD ArfGap 505 635 - -
Trre5g04743 808 SUPERFAMILY Ankyrin repeat 660 795 IPR036770 -
Trre5g04743 808 PRINTS HIV Rev interacting protein signature 533 550 IPR001164 GO:0005096
Trre5g04743 808 PRINTS HIV Rev interacting protein signature 514 533 IPR001164 GO:0005096
Trre5g04743 808 PRINTS HIV Rev interacting protein signature 556 577 IPR001164 GO:0005096
Trre5g04743 808 Gene3D - 648 806 IPR036770 -
Trre5g04743 808 ProSiteProfiles Ankyrin repeat profile. 750 782 IPR002110 GO:0005515
Trre5g04743 808 Pfam Ankyrin repeats (3 copies) 722 792 IPR002110 GO:0005515
Trre5g04743 808 ProSiteProfiles Ankyrin repeat region circular profile. 717 748 - -
Trre5g04743 808 Gene3D Arf GTPase activating protein 482 647 IPR038508 -
Trre5g04743 808 Pfam Putative GTPase activating protein for Arf 505 641 IPR001164 GO:0005096
Trre5g04743 808 SMART PH_update 295 431 IPR001849 -
Trre5g04743 808 CDD PH_ACAP 297 433 - -
Trre5g04743 808 SUPERFAMILY ArfGap/RecO-like zinc finger 502 642 IPR037278 -
Trre5g04743 808 Pfam PH domain 295 428 IPR001849 -
Trre5g04743 808 SMART 5bar 2 218 IPR004148 GO:0005515|GO:0005737
Trre5g04743 808 ProSiteProfiles Ankyrin repeat region circular profile. 750 776 - -
Trre5g04743 808 SUPERFAMILY BAR/IMD domain-like 6 317 IPR027267 -
Trre5g04743 808 PANTHER CENTAURIN/ARF 3 806 IPR045258 GO:0005096
Trre5g04743 808 SUPERFAMILY PH domain-like 207 428 - -
Trre5g04743 808 ProSiteProfiles PH domain profile. 294 429 IPR001849 -
Trre5g04743 808 Coils Coil 118 138 - -
Trre5g04743 808 Gene3D - 287 439 IPR011993 -
Trre5g04743 808 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 484 649 - -
Trre5g04743 808 ProSiteProfiles ARF GTPase-activating proteins domain profile. 502 648 IPR001164 GO:0005096
Trre5g04743 808 ProSiteProfiles Ankyrin repeat profile. 717 749 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04743 Trre-Chr5 49290267 49296392 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04743 506 642 C2H2 Transcription Factor Family AT4G21160 38.406 2.47e-19 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04743 K12489 - gmx:100797073 1113.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04743 5 49290267 49296392 Trre5g04743 5 49290267 49296392 ECH