Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04742 ATGAATTTTGCAAAACTCAACGATTCTCCCATGTTTCGTCAACAGCTTCAGAGTTTGGAAGAAAGTTCAGAATCGTTACGTTCCAGATGTTGGAAGTTCTATAAAGGATGTAGAAAATACACGGAAGGGCTAGGAGAGGCATATGATGGAGACATTGGATTTGCAACTGCCCTTGAAAATTTTGGAGGAGGCCATAGTGACCCTCTTTTTGTAACTTTGGGAGGACCTGTAATGACCAAATTCGCTATTGCTTTGAGAGAAATCAGTACACACAAGGAACTTCTTCGGTCACAGGTCGAGCATATGCTGAATGACCGGTTACTGAACATCCTAAATGTCGAAATCCTTGATGTCAAGGAAGCTCGGAGGCGTTTTGATAAAGCTTCCCAAGTATATGATCAGGCACGTGAGAAGTTTATGTCATTGAGAAAAAGCACCAAGTTTGATGTTGCAGCTGTGATAGAAGAGGAATTGCACAATGCAAGAACAATATTCGAGGAAGCTCGTTTCAATCTGGTTGGTGCTCTTCATAATATTGAGGCAAAGAAGAGATTTGAGTTTTTGGAGGCCGTCACTGGAGTTATGGACGCTCATCTTCGATACTTTCAACAGGGATATCAGCAGTTACAAGAGCTGGAGCCTTTCATTATTGAGGTTTTGGCTTATGCACAAAAGGCAAGAGAAAGTTACAATGAAGAGCAGATTTCTCTTTGTGAAAGAATGGTAGAGTACAAAAAACAAAGTTACCAAGAAAGTCGATTGTCCTTGAATGGCCCTTATGGCTCTCCCAGTGCAGACAATGCGCATATGCATCCTTTTTCTCGGATATCAAGTAGTGTGATAGATGCAGTAGCTGAATCAGCTGCAAATGGAAAGGTTCGAGTCATTCGACAAGGGTATCTTTCAAAACGTTCCTCGAATTTGAGGGGAGACTGGAAGAGAAGATTTTTTGTTCTTGATAGCCTCGGAACGCTTTACTACTACCGTAAACCATTACAAGTAAATAGTTTTAATCAGCAATGTACACAGAGGAATTGCGCCAATGAAAACAGTGCTGGCATTCTGAGTAGGTTACTTTCTTCACAATACCATGTAGTTGTTCCTGATGAAAAATCTGTAGCTCGTCACACGGTGAACCTGCTCACATCAACAATCAAGATTGATGCTGAGCAATCAGATTTAAGGTTCTGCTTCAGGATTATTTCACCCTCAAAGATGTATACTTTGCAGGCAGAAAATGCCCTTGACCAGATGGATTGGATGGAAAAAATAAACGGAGTCATTGCGTCTTTGTTGTCTGTACAAACACTAGGTGTACAGTATAAATCAGCTGACTCAGAAAGCTGTGACAGCGACTCTTCCAACAACACCGACTCATTACAAAGTTTACAAGACCATGATCAATTAATGAGCGGAGAATTTGCACCAAAGAACTCCGCCATCAATAAATCGTCTGAAAAACCATCTGAAGACTTGCAGAAGAATAAGCAGTGTGTAAAAGTTGAACAGCCAATTGATATTCTAAGAAAGGTTAGCGGGAATGATAAATGTGCCGATTGCGGTAAACCTGAACCAGACTGGGCATCCTTAAACCTTGGTATCCTTGTATGCATTGAATGTTCCGGCATTCACCGTAATCTTGGTGTACATAAATCAAAAGTACGGTCACTGAAACTTGATGTTAAAGTGTGGGATTCCTCCGTCTTAACTATGTTTCAGTCACTAGGAAATCTCTTTGCGAACTCGGTTTGGGAGGAGCTTTTGCATGCAGCAACAAGTACTTCACAAACTGATGACACTCCTTACGGTTCATCCAAATCCGATAAAAACAAGTTAGGTTATGCAAAAAAACCAGAACTTGATGATCCTATTTCAATAAAGGAAAGATTCATTCATGCAAAGGTGTCAAAAAGTCACCACCTTCTTTCGGTGGCACAACAAGTGATGGAATGCATCTGTGCCAATGACAAGAAAGCAGTGTACCGGCACATTGTGAAATCAGATGTGGATATCAATTCTGTTAGTGGAGACATAATATCCGGCTATTTTTCTAATATGTCGTCTTCAAGTGATTCAAACAAATCTTCTACAAGTAAAACTCAGATAATGGAGGACATGCACGAAGGTTCTAGTGTGCTTCACTTGGCTTGCCTAACAAGTGATGCTGGAATGATAGAGCTTCTTCTACAGTACGGCGCAGATGTAAATGCTATTGATTCAAGAGGTAGGACACCGCTGCATTACTGCATTTTGAGAGGAAAGACGGCAGCTGCCAGATTGTTTATTACAAGGGGGGCCAATCCACTTGCCGTAGATAAATACGGCAACACTCCTCTTATGCTTGCACCAGAACCCGGGGCTATTGGCAAAGACATTCTTGCTCTCTTATCAAGCAGATGA 2400 0.4133 MNFAKLNDSPMFRQQLQSLEESSESLRSRCWKFYKGCRKYTEGLGEAYDGDIGFATALENFGGGHSDPLFVTLGGPVMTKFAIALREISTHKELLRSQVEHMLNDRLLNILNVEILDVKEARRRFDKASQVYDQAREKFMSLRKSTKFDVAAVIEEELHNARTIFEEARFNLVGALHNIEAKKRFEFLEAVTGVMDAHLRYFQQGYQQLQELEPFIIEVLAYAQKARESYNEEQISLCERMVEYKKQSYQESRLSLNGPYGSPSADNAHMHPFSRISSSVIDAVAESAANGKVRVIRQGYLSKRSSNLRGDWKRRFFVLDSLGTLYYYRKPLQVNSFNQQCTQRNCANENSAGILSRLLSSQYHVVVPDEKSVARHTVNLLTSTIKIDAEQSDLRFCFRIISPSKMYTLQAENALDQMDWMEKINGVIASLLSVQTLGVQYKSADSESCDSDSSNNTDSLQSLQDHDQLMSGEFAPKNSAINKSSEKPSEDLQKNKQCVKVEQPIDILRKVSGNDKCADCGKPEPDWASLNLGILVCIECSGIHRNLGVHKSKVRSLKLDVKVWDSSVLTMFQSLGNLFANSVWEELLHAATSTSQTDDTPYGSSKSDKNKLGYAKKPELDDPISIKERFIHAKVSKSHHLLSVAQQVMECICANDKKAVYRHIVKSDVDINSVSGDIISGYFSNMSSSSDSNKSSTSKTQIMEDMHEGSSVLHLACLTSDAGMIELLLQYGADVNAIDSRGRTPLHYCILRGKTAAARLFITRGANPLAVDKYGNTPLMLAPEPGAIGKDILALLSSR 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04742 799 PRINTS HIV Rev interacting protein signature 514 533 IPR001164 GO:0005096
Trre5g04742 799 PRINTS HIV Rev interacting protein signature 533 550 IPR001164 GO:0005096
Trre5g04742 799 PRINTS HIV Rev interacting protein signature 556 577 IPR001164 GO:0005096
Trre5g04742 799 ProSiteProfiles Ankyrin repeat profile. 708 740 IPR002110 GO:0005515
Trre5g04742 799 Gene3D - 671 799 IPR036770 -
Trre5g04742 799 MobiDBLite consensus disorder prediction 594 614 - -
Trre5g04742 799 CDD BAR_SFC_plant 15 215 IPR035670 -
Trre5g04742 799 ProSiteProfiles ARF GTPase-activating proteins domain profile. 502 585 IPR001164 GO:0005096
Trre5g04742 799 ProSiteProfiles Ankyrin repeat region circular profile. 708 739 - -
Trre5g04742 799 ProSiteProfiles Ankyrin repeat region circular profile. 741 767 - -
Trre5g04742 799 CDD ArfGap 505 634 - -
Trre5g04742 799 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Trre5g04742 799 SMART arf_gap_3 502 628 IPR001164 GO:0005096
Trre5g04742 799 ProSiteProfiles Ankyrin repeat profile. 741 773 IPR002110 GO:0005515
Trre5g04742 799 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 484 669 - -
Trre5g04742 799 Pfam PH domain 295 428 IPR001849 -
Trre5g04742 799 Pfam Putative GTPase activating protein for Arf 505 599 IPR001164 GO:0005096
Trre5g04742 799 SUPERFAMILY ArfGap/RecO-like zinc finger 502 593 IPR037278 -
Trre5g04742 799 Pfam BAR domain of APPL family 6 233 IPR004148 GO:0005515|GO:0005737
Trre5g04742 799 SMART PH_update 295 431 IPR001849 -
Trre5g04742 799 SUPERFAMILY PH domain-like 207 428 - -
Trre5g04742 799 CDD PH_ACAP 297 433 - -
Trre5g04742 799 Gene3D - 287 439 IPR011993 -
Trre5g04742 799 PANTHER CENTAURIN/ARF 3 797 IPR045258 GO:0005096
Trre5g04742 799 SMART 5bar 2 218 IPR004148 GO:0005515|GO:0005737
Trre5g04742 799 SUPERFAMILY BAR/IMD domain-like 6 317 IPR027267 -
Trre5g04742 799 SMART ANK_2a 741 770 IPR002110 GO:0005515
Trre5g04742 799 SMART ANK_2a 708 737 IPR002110 GO:0005515
Trre5g04742 799 Pfam Ankyrin repeats (3 copies) 713 783 IPR002110 GO:0005515
Trre5g04742 799 SUPERFAMILY Ankyrin repeat 651 786 IPR036770 -
Trre5g04742 799 ProSiteProfiles PH domain profile. 294 429 IPR001849 -
Trre5g04742 799 Coils Coil 118 138 - -
Trre5g04742 799 Gene3D Arf GTPase activating protein 482 645 IPR038508 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04742 Trre-Chr5 49290267 49296392 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04742 490 585 C2H2 Transcription Factor Family AT3G07940 48.000 2.74e-18 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04742 K12489 - gmx:100797073 1095.88