Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04741 ATGATTTCCAGAATGAACAACAACAACAATGCTTGGATAGAAGAAAGAGAAGACGAAAACACAACAAACCCAAACACTCCTTCATCTGTTTCTCCTTTCATCCATAACAACAACAACACACAACATTTCTCTTCTTTCATCAAACCCATGCTTCAAATCAACGATGAAGATGCTGAATGGTACATCAGAGACATGCCTTTTCCTCCTAACTTAGACAACGTTTTACTCAACAACGTTGATTCTGTTTCTTCTTCTTCATGTTCACCTTCTTCTTCTCTTTTCAACTCACTTGATCCTTCACCATCAAATCTTCAGTACTTTCTTCCTCCAAATCATAAACCCATTAACAACAACACTAACACCCTTTGTTCTCTTCTCAACAACAACAACAACAATAACCCTTTTGAAATCCCTTCTGAACTTGGTTTTCTTGATCATCAAGCTTCATTTCTGGGTAGTTTTGATTTCACTTCAAAAAATCAGTTACCAGCTTCTACTACACAGTTGAGCTTACCCGTTTTACCCCAATTGCCTCAAATCAACAATGGCTTCAATGGTTTCATGGGGTTTCAGAACTCTCAAGAGGGTTATGGAAAGTCACTTTTTTTGAGACCACTTGATTCTTTACCTTCTTCTGGAACACAACCTACTCTGTTTCAGAAAAGAGCAGCGCTGAGAAAAAACATGGGCAAGTGTGAAATTGGTGGAGGGAATGATAAGAAAAGGAAGATCAGTGGTGGAGATGAAATGGATGATTTGAGTTTTGATGGGTCTGGTTTGAACTATGATTCTGATGATTTAACTGAGAGTAACAATTTTGGTAAAGTGGAAGAGATTAATGGAAAAAACTGTGGAAATGGTTCTAATGGGAATAGTACTGTAACGGGTGGTGTTGATCAGAAAGGGAAAAAGAAAGGAATCCCTGCTAAGAATTTGATGGCCGAACGTCGTCGCCGGAAGAAGCTCAATGATAGACTCTATATGCTGAGGTCTGTTGTTCCAAAGATTAGCAAAATGGACAGGGCTTCAATTCTTGGGGATGCAATTGAGTATTTGAAGGAACTTTTGCAAAGGATCAATGACCTTCATAATGAGTTGGAATCAACACCTGCTGGATCTTCACTAACACCTGCTTCAAGCTTCCATCCTTTGACACCGACTCCGTCTTCGTTGCCGAGTTGTATCAAAGAAGAACTATGTCCCAGCTCATTGCCAAGCCCTATTGGCCAACCTGCCAGGGTCGAGGTTCGGTTGCGAGAAGGAAGGGCTGTTAATATCCACATGTTTTGTGCTCGCAAACCTGGTCTTTTGCTGTCAACCATGAGGGCTTTGGATAACCTTGGATTAGACATTCAGCAAGCTGTTATAAGCTGTTTCAATGGATTTGCCATGGATATATTTAGAGCCGAGCAATGCAAAGAAGGTCAAGATATCCATCCAGAGGAAATCAAAGCAGCACTCTTGGATTCAGCTGGCTTCAATAGCATGGCCTAA 1494 0.4063 MISRMNNNNNAWIEEREDENTTNPNTPSSVSPFIHNNNNTQHFSSFIKPMLQINDEDAEWYIRDMPFPPNLDNVLLNNVDSVSSSSCSPSSSLFNSLDPSPSNLQYFLPPNHKPINNNTNTLCSLLNNNNNNNPFEIPSELGFLDHQASFLGSFDFTSKNQLPASTTQLSLPVLPQLPQINNGFNGFMGFQNSQEGYGKSLFLRPLDSLPSSGTQPTLFQKRAALRKNMGKCEIGGGNDKKRKISGGDEMDDLSFDGSGLNYDSDDLTESNNFGKVEEINGKNCGNGSNGNSTVTGGVDQKGKKKGIPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESTPAGSSLTPASSFHPLTPTPSSLPSCIKEELCPSSLPSPIGQPARVEVRLREGRAVNIHMFCARKPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDIFRAEQCKEGQDIHPEEIKAALLDSAGFNSMA 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04741 497 Coils Coil 345 369 - -
Trre5g04741 497 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 309 373 IPR036638 GO:0046983
Trre5g04741 497 CDD ACT_UUR-ACR-like 426 490 - -
Trre5g04741 497 FunFam BHLH transcription factor 302 370 - -
Trre5g04741 497 Gene3D - 300 370 IPR036638 GO:0046983
Trre5g04741 497 MobiDBLite consensus disorder prediction 1 34 - -
Trre5g04741 497 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 185 494 - -
Trre5g04741 497 Pfam Helix-loop-helix DNA-binding domain 313 355 IPR011598 GO:0046983
Trre5g04741 497 MobiDBLite consensus disorder prediction 284 305 - -
Trre5g04741 497 SMART finulus 312 361 IPR011598 GO:0046983
Trre5g04741 497 MobiDBLite consensus disorder prediction 284 298 - -
Trre5g04741 497 MobiDBLite consensus disorder prediction 230 250 - -
Trre5g04741 497 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 306 355 IPR011598 GO:0046983
Trre5g04741 497 MobiDBLite consensus disorder prediction 233 250 - -
Trre5g04741 497 CDD bHLH_AtAMS_like 309 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04741 Trre-Chr5 49285752 49288225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04741 61 470 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 53.846 4.59e-116 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre5g04741 HLH 1.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04741 - - gmx:100217341 513.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g03276 15 31682890 31683405 Trre5g04741 5 49285752 49288225 ECH
Trre5g04741 5 49285752 49288225 Trre5g04741 5 49285752 49288225 ECH