Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04733 ATGGCAATAATAGCTATTCTATTTCTTCATCTAAGTTTTTTCATCTTGAAAGTATTTTCTTTCTCTTCTCATTCTCATGCAGATACAATTGTTACTCTTCCTGGACAACCACACATAGCATTTCAACAATTCTCAGGATATGTCACAGTTGATAACAAAAAACACAAATCACTTTTTTACTATTTTGCTGAATCAGAAACTGATCCATCTTCAAAACCTCTTGTTCTTTGGCTCAATGGAGGACCTGGTTGTTCTTCTTTAGGAGTAGGTGCGTTCTCAGAAAATGGACCCTTTAGACCAAATGGTGAATTTCTTATTAAAAATGAACATAGTTGGAATAAAGAGGCAAATATGCTTTATTTGGAGACACCAATTGGAGTTGGATTTTCCTATGCTAAAGGTAGTTCTGCTTATACAACAACAGTGAATGATGAAGAAACAGCAAGGGACAATCTTGTATTCTTGCAACGTTGGTTCAACAAGTTTCCACAATATAGAAATAGAGATTTGTTTCTAACTGGTGAAAGTTATGCAGGTCATTATATTCCTCAACTAGCAAAGCTTATGATTGAAATGAACAAAAGAAACAAGATATTCAATCTCAAAGGCATAGCTTTAGGGAATCCAGTGCTAGAATATGCTACTGATTTTAATTCAAGGGCTGAGTTTTTTTGGTCACATGGACTAATATCTGATGCAACTTATAACATGTTCACTACAGTGTGTAATTACTCACGTTATGTAAGTGAGTATAATAGAGACTCAGTTTCATCTCTTTGTTCAAAGGTTATGGGATTGGTGAGTAAAGAAACTAGTAGATTTGTGGATAAATATGATGTCACTCTTGATGTTTGTATTTCCTCTGTGCTGTCACAATCCAAAGTTATTTCTCCACAGCCTCAACAAGCAAATGAGATGATAGATGTGTGTGTGGATGATAAGGTTACAAATTACTTAAACAGGAGAGATGTGCAAGAGGCACTTCATGCAAAACTTGTCGGAGTTCGCAAGTGGGATGTCTGCAGCAATGTTCTTGACTATGATGTCCTTAACTTGGAAGTGCCAACACTTCCTATTGTTGGATCATTGATTAAAGCTGGAGTTAGAGTCCTAATTTACAGTGGTGATCAAGATTCAGTGATTCCACTGACTGGAAGCAGAACCTTAGTTCAAAAATTGAGCAGACAATTAGGACTGAATACAACAGTACCTTACAGAGTATGGTTTGAAGGCCAGCAGGTTGGTGGATGGACTCAAGTTTATGGAAATATTCTCTCATTTGCCACTGTCAGAGGTGCTGCACATGAAGCTCCTTTCTCACAGCCTGAAAGATCACTTGTGCTATTCAAATCATTCTTGGAAGGAAGCCCTTTACCTGAAATTTTCTGA 1389 0.3686 MAIIAILFLHLSFFILKVFSFSSHSHADTIVTLPGQPHIAFQQFSGYVTVDNKKHKSLFYYFAESETDPSSKPLVLWLNGGPGCSSLGVGAFSENGPFRPNGEFLIKNEHSWNKEANMLYLETPIGVGFSYAKGSSAYTTTVNDEETARDNLVFLQRWFNKFPQYRNRDLFLTGESYAGHYIPQLAKLMIEMNKRNKIFNLKGIALGNPVLEYATDFNSRAEFFWSHGLISDATYNMFTTVCNYSRYVSEYNRDSVSSLCSKVMGLVSKETSRFVDKYDVTLDVCISSVLSQSKVISPQPQQANEMIDVCVDDKVTNYLNRRDVQEALHAKLVGVRKWDVCSNVLDYDVLNLEVPTLPIVGSLIKAGVRVLIYSGDQDSVIPLTGSRTLVQKLSRQLGLNTTVPYRVWFEGQQVGGWTQVYGNILSFATVRGAAHEAPFSQPERSLVLFKSFLEGSPLPEIF 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04733 462 Pfam Serine carboxypeptidase 37 455 IPR001563 GO:0004185|GO:0006508
Trre5g04733 462 FunFam Carboxypeptidase 356 455 - -
Trre5g04733 462 ProSitePatterns Serine carboxypeptidases, serine active site. 172 179 IPR018202 GO:0004185
Trre5g04733 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 108 120 IPR001563 GO:0004185|GO:0006508
Trre5g04733 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 121 131 IPR001563 GO:0004185|GO:0006508
Trre5g04733 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 158 183 IPR001563 GO:0004185|GO:0006508
Trre5g04733 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 425 438 IPR001563 GO:0004185|GO:0006508
Trre5g04733 462 FunFam Carboxypeptidase 23 459 - -
Trre5g04733 462 Gene3D alpha/beta hydrolase 23 458 IPR029058 -
Trre5g04733 462 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 31 442 IPR001563 GO:0004185|GO:0006508
Trre5g04733 462 SUPERFAMILY alpha/beta-Hydrolases 31 459 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04733 Trre-Chr5 49225063 49228479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04733 318 458 Calmodulin-binding Proteins AT2G22960 29.078 7.63e-17 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04733 K16297 - gmx:100795668 827.78