Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04728 ATGGCAGCTTTTTCATATCAATACCATCCTTTCCTTGTTGACTCATCATTTATGCTCAACATGAACACTTGTTCTCCTCCATCTTCTTCACAGTTTCATCCTCTTCATCAAGATATAATTAACTGTGTTGATCAACAAAGCTCTAAAGTTACAACCATGAGTGATAATGAACCTTCTTCTGTCACTAAAAACCTTAGTCCTCAATCCTCCATGGTACTCGACAAGCTCGAAACCGGCGATGAACAAGTTACACAAAAAGTTTCTCCTATGGAGAAGAAGAGAAGAACCAGAAACAATGGACTTTCCTCTACTAAGCAACAATCTCATGATAATAATTTAGTAGAAGGGAGAAACAAGAAACAGAAAAAGAACAAAGAAGAGGAGAATCCAAAAGCAGAGAAGAAAGATCAGAGGAAGTGTTTGGATGAGCCCCCAACTGGATACATCCACGTCAGAGCAAGAAGGGGTCAGGCAACTGATAGCCACAGCCTTGCTGAAAGGGTAAGAAGAGAGAAAATAAGTGAAAGGATGAAGAAGTTGCAACAACTTGTGCCAGGCTGTGATAAGGTAACTGGAAAGGCCCTTATGTTAGATGAAATAATCAATTATGTTCAGTCTTTACAGAATCAAGTGGAGTTTTTGTCAATGAAACTTACTTCTGTGAATCCAATGTTCTATGACATGGCAACAGACCTTGACACTTTCTTGATTAAACCAGAGAAATTAAATAACTTAGCATCACCATCACAACTATCATCTGTGTCACATTGCAATAGTCCTAAACAAGGCACAAATTTTGGTGATACAACAATCATGAGTACTCCAACCAACATCTTTCAAACTACTAATGACTACCTTTTGGATACTTCAACATCAATTTTTCTTCAAGGCCAGAGCCAGAGGACAAATATTCTCTCTGAGGATGGTAGTCATTTTTGGGAGGTAGAAGAGCAGAGACAAAAATTTCTTAATTCACATGGATTCAACAACTTATGTTCCTTTCATTAA 1008 0.379 MAAFSYQYHPFLVDSSFMLNMNTCSPPSSSQFHPLHQDIINCVDQQSSKVTTMSDNEPSSVTKNLSPQSSMVLDKLETGDEQVTQKVSPMEKKRRTRNNGLSSTKQQSHDNNLVEGRNKKQKKNKEEENPKAEKKDQRKCLDEPPTGYIHVRARRGQATDSHSLAERVRREKISERMKKLQQLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLTSVNPMFYDMATDLDTFLIKPEKLNNLASPSQLSSVSHCNSPKQGTNFGDTTIMSTPTNIFQTTNDYLLDTSTSIFLQGQSQRTNILSEDGSHFWEVEEQRQKFLNSHGFNNLCSFH 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04728 335 MobiDBLite consensus disorder prediction 49 75 - -
Trre5g04728 335 MobiDBLite consensus disorder prediction 49 144 - -
Trre5g04728 335 FunFam Basic helix-loop-helix transcription factor 154 226 - -
Trre5g04728 335 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 51 259 IPR024097 GO:0006355
Trre5g04728 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 155 224 IPR036638 GO:0046983
Trre5g04728 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 157 207 IPR011598 GO:0046983
Trre5g04728 335 MobiDBLite consensus disorder prediction 112 144 - -
Trre5g04728 335 Gene3D - 154 227 IPR036638 GO:0046983
Trre5g04728 335 Pfam Helix-loop-helix DNA-binding domain 161 208 IPR011598 GO:0046983
Trre5g04728 335 CDD bHLH_AtBPE_like 147 232 - -
Trre5g04728 335 SMART finulus 163 213 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04728 Trre-Chr5 49113891 49115868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04728 95 290 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 53.695 1.64e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre5g04728 HLH 2.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04728 - - gmx:100806696 429.869