Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04718 ATGACTCCAAGAGTGACTCCAGCTAGGTCTGAGCAAACAATGGTCCAGTATCTGCCAAACAGAGGAGGATTCTTAACAGCTCACATCATTGGACAGGATTATGGAGAAATGAACCCAAAGTTTATCTTTGAAGTTTATGAAGAACTTGATTCAAAACTGACTATCTGTGATGAAACTAACCGAAACATTAAAGTTGAATGGAATGGTTCCTCTCAACATCCTTTAATACTGACCGGATGGAAAAACCTTAGGAGGTTCTTTGGAATCACTGGGAACAAAATGCTTCTCATGACTTATCTTGGAACTTCAGCTTTCTTGCTTGAGATTCTCCCTCAACCATTTGATCCATTGAACTTGCCTTCTTATCATTCATACCGGACTTTTGAAGCTGACCCAACATCATTTGATGTTAAGCTCACTGCTTACCATGTATCAGGTTCTCAATTGACTTTGACAAAGGAGTTTGCTGCCTACATTCGCCAAACAAAGTTCAAAACATTGCTTCTTTATAGACCAGAGGGAGATGAATTTAGCTGCTCAATTCTGAGGAGCAAAAAGCAAACAAAAATTGGTAAAGGTTGGAAAGAATTTGTGGATAAGAATAGCTTTGAAGAAGGTGAAGTGCTCAACTTTAAGTTTGTCAACAAGTATGAATCAAATGTCATGAGGGTTATTCTCCGCTAA 684 0.386 MTPRVTPARSEQTMVQYLPNRGGFLTAHIIGQDYGEMNPKFIFEVYEELDSKLTICDETNRNIKVEWNGSSQHPLILTGWKNLRRFFGITGNKMLLMTYLGTSAFLLEILPQPFDPLNLPSYHSYRTFEADPTSFDVKLTAYHVSGSQLTLTKEFAAYIRQTKFKTLLLYRPEGDEFSCSILRSKKQTKIGKGWKEFVDKNSFEEGEVLNFKFVNKYESNVMRVILR 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04718 227 SUPERFAMILY DNA-binding pseudobarrel domain 129 222 IPR015300 -
Trre5g04718 227 Gene3D - 121 227 IPR015300 -
Trre5g04718 227 CDD B3_DNA 134 216 IPR003340 GO:0003677
Trre5g04718 227 Pfam B3 DNA binding domain 137 222 IPR003340 GO:0003677
Trre5g04718 227 SMART B3_2 135 221 IPR003340 GO:0003677
Trre5g04718 227 ProSiteProfiles B3 DNA-binding domain profile. 134 227 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04718 Trre-Chr5 49003085 49004599 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre5g04718 B3 1.1e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04718 - - tpra:123900141 231.491