Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04708 ATGAAGGAATCAGAATCATCAAACCCAATCACAACTTGCCTCAATCTCACCCATTCACTCTTAAACCACGAAATCCCCACCGTCCATCACTTAAAATCCAAATGGTCAATCTTCAAACTCAAACTCACCACACTCCAAACTCACCTCACCGATTTCTCCACCGACTACTCCAATTCCTCAACCACAAACCCTCTCTCTCTTCATCTCCTTCACTCCATCACTCAAACCCTAAACGACGCCGTTTCACTCTCTCAACACTGTCAATCTGATTTACCCCTCGGTAAACTCCAAACTCAAAGCCAACTCGACTCTCTCATCGCTACTCTCCACCGCCACGTCACCGACTGCGATGTTCTCTTCCGTAGTGGTCTTCTCCTCGAAACTCCCGCTTTCTCTAAACGTGAAGCCGTTCGATCTCTTTCTAGAAACCTCATCGCACGGTTACAAATCGGTTCGTCTGATTCACGCGCCACTGCGATCGACTCGCTTTTATCTCTTCTCAACCAAGATGACAAGAACGTTACTATAGCCGTCGCGCAGGGTGTAGTGCCGGTGCTCGTTCGGTTACTCGATTCGTCGTCGTCCTCTGATATGAAGGAGAAAACGGTCGCCGCCATTTCTAGAGTCTCTGTGGTGGAAAGCGGAAAAAACAACCTACTCGCGGAGGGGTTGTTGTTGCTTAATCATTTGCTTAGGGTTTTGGATTCTGGAAGTGGTTTAGCTATAGAGAAAGCTTGTATTACGCTTCAGGCGTTGAGTTTTACTAGAGATAATGCTAGAGCGATTGGATCTAGAGGTGGAATTTCGTCTCTGTTAGGGATTTGTCAAGGTGGTACGCCTGGTTCGCAAGCTTCTGCTGCGGCGGTTTTGAGGAATCTTGCGAAATTTAATGAAATTAGAGAGAATTTCGCGGAGGAGAATGCGGTTGTTGTTTTATTAGCGTTGGCTTCTTCTGGAACAGTGTTGGCGCAAGAGAATGCGATTGGTTGTGTGGCGAATTTGATTTCGGAGGATGAGAGTATGAGGGTTTTGGCTTTTAAAGAAGGTGGAGTTGAGTGTTTGAAGAATTTCTGGGATTCGGCTCCGGTGATTCAGAGTCTTGAAGTTGGTGTTGAAATGTTGAGGTATTTGGCTATGACTGGTCCAATTGGTGAAGTTCTTGTTGCGGAAGGGTTTGTTGGGAGGGTAATGGGAGTGTTGAATTGTGATGTTTTAACGGTGAGGATTGCGGCTGCGCGAGCGGTTTATGCTATGGGTTTGAACGGTGGAAGCAAAACGAAAAAGGAAATGGGGGAATGTGGGTGTGTTCCTTTTTTGATTAAGATGTTGGATGGGAAAGGTGCAGAGGAGAAAGAATCTGCTGCAATGGCGTTGTCGGTGTTACTGCAACACCCTTTCAATAGAAGGATTTTTCGTAAGGATGAGAGGGGAATAGTTAGCGCAGTTCATCTGTTGAACCCTTCTTTGGTTAATTTGGATAAGAAATACCCTGTTTCGTTGTTGGTTTCGCTCTTGCATTCAAAGACTTGTAGGAAACAAATGGTGGCTGCGGGGGCTTGTGTATATACGCAGAAGCTTGTTGAATTGGATGTTCCAGGTTCGAAAAAATTGTTAGATGGACTTGGTCGTGGTAAGATATGGGGAGTTTTTGCAAGACCCTAA 1662 0.4573 MKESESSNPITTCLNLTHSLLNHEIPTVHHLKSKWSIFKLKLTTLQTHLTDFSTDYSNSSTTNPLSLHLLHSITQTLNDAVSLSQHCQSDLPLGKLQTQSQLDSLIATLHRHVTDCDVLFRSGLLLETPAFSKREAVRSLSRNLIARLQIGSSDSRATAIDSLLSLLNQDDKNVTIAVAQGVVPVLVRLLDSSSSSDMKEKTVAAISRVSVVESGKNNLLAEGLLLLNHLLRVLDSGSGLAIEKACITLQALSFTRDNARAIGSRGGISSLLGICQGGTPGSQASAAAVLRNLAKFNEIRENFAEENAVVVLLALASSGTVLAQENAIGCVANLISEDESMRVLAFKEGGVECLKNFWDSAPVIQSLEVGVEMLRYLAMTGPIGEVLVAEGFVGRVMGVLNCDVLTVRIAAARAVYAMGLNGGSKTKKEMGECGCVPFLIKMLDGKGAEEKESAAMALSVLLQHPFNRRIFRKDERGIVSAVHLLNPSLVNLDKKYPVSLLVSLLHSKTCRKQMVAAGACVYTQKLVELDVPGSKKLLDGLGRGKIWGVFARP 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04708 553 Gene3D - 229 529 IPR011989 -
Trre5g04708 553 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 181 224 IPR000225 GO:0005515
Trre5g04708 553 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 13 551 - -
Trre5g04708 553 Gene3D - 132 228 IPR011989 -
Trre5g04708 553 SUPERFAMILY ARM repeat 143 491 IPR016024 -
Trre5g04708 553 SMART arm_5 255 295 IPR000225 GO:0005515
Trre5g04708 553 SMART arm_5 170 211 IPR000225 GO:0005515
Trre5g04708 553 SMART arm_5 296 336 IPR000225 GO:0005515
Trre5g04708 553 SMART arm_5 423 463 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04708 Trre-Chr5 48944702 48946363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04708 142 296 U-box Gene Family AT1G71020 31.613 4.24e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04708 - - gmx:100807228 735.332