Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04704 ATGGGTTGCGTGCTTGGTACGCCGGCCGGTGACGGAGATCAACGCCGTCACCGGAAAGATCAGCGTAACGGTTCTTCTGAAGTAGTTAATAATGTCGTTACGGTTCGTGATAAGCAAAGAAATCGTCACACCGGCGATTTTCCGGGGACTCTTCCGGCAATAGAGCGTCGGAAACCTATACTCGATCCGCTTGCGGTCAATCAACAAGGTTGGCCGTCTTGGTTAATGGCTGTCGCCGGTGAAGCTATCGGCGATTGGACTCCTCGTCGTGCTAACACGTTTGAAAAACTTGCTAAGATTGGGCAAGGGACTTATAGTAATGTGTATAAAGCTAGAGATTTAGTTACAGGGAAGATAGTGGCTTTGAAGAAAGTGAGATTTGATAATTTGGAACCAGAGAGTGTCAAGTTTATGGCAAGAGAGATACTTGTTATGAGAAAACTTGATCATCCAAATGTATTAAAGCTTGAAGGATTGGTTACTTCTAGAATGTCATGTAGTCTTTATTTGGTATTTGAGTATATGGAACATGATCTTGCAGGTCTTTCTGCTAGTCAAGGTGTTAAGTTTACTGAACCTCAGGTCAAATGTTTTATGAAGCAATTACTTTCCGGTCTTGAGCATTGCCACAGTCGAGGTGTATTGCACCGTGATATCAAGGGTTCCAATCTGCTTATTGACAATGAAGGAATCCTAAAAATTGCAGATTTTGGATTGGCAACTTTCTATAATCCTAATAAAAAACAGTGCATGACAAGCAGAGTTGTGACACTTTGGTATCGACCCCCTGAGCTTCTTCTTGGGGCTACATTTTATGGTGTAGGTATTGACCTTTGGAGTGCAGGTTGCATTTTGGCAGAGCTACTTGCTGGGAAGCCAATCATGCCTGGCCGAACAGAGGTTGAACAACTACACAAAATTTTTAAGTTGTGTGGCTCTCCTGCTGAGGAATATTGGAGGAAGCATAAATTGCCAAATGCTACAATCTTTAAGCCACAGCAGCCATATAAACGTTGTATCTCCGAAACATTCAAGGATTTTCCTCTATCTTCACTTCCTCTAATTGAAACTCTTCTTGCAATAGATCCTGACGGTCGGGGCACTGCCTCAGCTGCTCTAAATCATGAATTTTTTACCACCGAGCCATATGCTTGTGAACCGTCGAGTTTGCCAAAGTATCCTCCGAGCAAAGAATTGGATGTAAAAATGAGAGATGAAGAAGCTAGAAGGCAAAAAGCACTAAATGGAAAATCTAATGGAGTTGATAGTACCAAAAGAGCCAGAGCACGTGAGCGTAGTCGAGCTATTCCGGCACCAGAAGCTAATGCAGAGAACCAAACAAACTTAGATAGGTGGAGAGTAGTGACCCATGCAAATGCAAAAAGCAAGAGTGAGAAATTTCCACCACCTCATCAAGATGGAGCTGTTGGATATCCACAAGATGAATCAAATAAAGGACCTGTTTCATTTGGTGCCCCAAACACATCCTTTAGCTCAGGAATATTCAATATAAAACCATCTGGTCCTACTAGAAGTCAAGATGGTACAGGAAATCACAAAGAGACGAAAACTAAAAAAGAAGAAACTCAGGTGGCATCATCATGGAAATTTTTCAAGCCATCAGCAATTGGACATTCAATGGATTTATTATTTAGGAGCAAGTAA 1665 0.4204 MGCVLGTPAGDGDQRRHRKDQRNGSSEVVNNVVTVRDKQRNRHTGDFPGTLPAIERRKPILDPLAVNQQGWPSWLMAVAGEAIGDWTPRRANTFEKLAKIGQGTYSNVYKARDLVTGKIVALKKVRFDNLEPESVKFMAREILVMRKLDHPNVLKLEGLVTSRMSCSLYLVFEYMEHDLAGLSASQGVKFTEPQVKCFMKQLLSGLEHCHSRGVLHRDIKGSNLLIDNEGILKIADFGLATFYNPNKKQCMTSRVVTLWYRPPELLLGATFYGVGIDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPAEEYWRKHKLPNATIFKPQQPYKRCISETFKDFPLSSLPLIETLLAIDPDGRGTASAALNHEFFTTEPYACEPSSLPKYPPSKELDVKMRDEEARRQKALNGKSNGVDSTKRARARERSRAIPAPEANAENQTNLDRWRVVTHANAKSKSEKFPPPHQDGAVGYPQDESNKGPVSFGAPNTSFSSGIFNIKPSGPTRSQDGTGNHKETKTKKEETQVASSWKFFKPSAIGHSMDLLFRSK 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04704 554 Pfam Protein kinase domain 94 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g04704 554 FunFam probable serine/threonine-protein kinase At1g54610 81 176 - -
Trre5g04704 554 MobiDBLite consensus disorder prediction 487 515 - -
Trre5g04704 554 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Trre5g04704 554 ProSiteProfiles Protein kinase domain profile. 94 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g04704 554 MobiDBLite consensus disorder prediction 410 531 - -
Trre5g04704 554 MobiDBLite consensus disorder prediction 516 531 - -
Trre5g04704 554 SUPERFAMILY Protein kinase-like (PK-like) 88 383 IPR011009 -
Trre5g04704 554 PANTHER CELL DIVISION PROTEIN KINASE 92 382 - -
Trre5g04704 554 ProSitePatterns Protein kinases ATP-binding region signature. 100 123 IPR017441 GO:0005524
Trre5g04704 554 CDD STKc_CDK9_like 94 378 - -
Trre5g04704 554 Gene3D Phosphorylase Kinase; domain 1 81 176 - -
Trre5g04704 554 SMART serkin_6 94 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g04704 554 MobiDBLite consensus disorder prediction 423 437 - -
Trre5g04704 554 MobiDBLite consensus disorder prediction 1 27 - -
Trre5g04704 554 Gene3D Transferase(Phosphotransferase) domain 1 177 418 - -
Trre5g04704 554 FunFam probable serine/threonine-protein kinase At1g54610 177 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04704 Trre-Chr5 48930583 48934141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04704 86 412 Core Cell Cycle Gene Families AT5G10270 51.714 6.00e-116 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Trre5g04704 Pkinase 1.4e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04704 K08819 - gmx:100807756 974.926