Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04702 ATGAACTCACTCATAGCTAATGAAATTCTCCATATGAAGCCAATCCACTTTTTCCTGATCATACCAGCTCAAAGCCTTCATCTAGGAAAGCTTATGATACCAAGAAAGTTTGTGGCAAAATATGGAGAATGTTTACCAAAAACTATATGTCTAAAGACTCCAAATGGTGTAAATTGGAAATTAAATTTGGTAAAAAGTGATGGCAAGTTATGGTTTCAAAAAGGTTGGAAAGAATTTGCAAAGTATCATTCTCTAGCTGATGGCCATCTTTTGCTTTTCAAATATGAAAAAACTTGCCATTTTCATGTTCATATCTTTGATAAGAGTGCCTTTGAGATTAATTACCCTTTCACAAGACTTGAAGCTAAAAGGGTTAAACCTTCAAATCATGAAGATTGTAGAGCAAGTCAAAAGAGAAAAGTTAACTCTTCCTTTGAAATTGGAAGCAGTAGTTGTGTTAAAGGAAAACAAGTGATCACTGATGCTGATAAAGTTTCAACACTTGAAAGAGCAAAATCTTTGAGAACATGCAATCCATCCTTTGTTCTTGTCATGGGCGCATCATATGTTGAACACCATTTTCTTCTGACTATACCAGCTATGTTTGGTAAGAAACACTTTGATTTGAACAAAAAGCGAGGAGATATTTATTTTCAAGTGTCAAACGGGATAGTTTGGCCTGCAAGGTACCGGATAAGGATGTCCTCTACAGGCCTAAGATTTGAACTCTCGAGTGGATGGAAAACATTTGCCATAGACAATAACTTGAAAGTTGGCGACGTTTGCAACTTTGAGCTCATTCTTAGTACTAATATGACCTTCCAAGTTCATATCTTTAGAGCGACAGATAACTTAATGAAAGAAGAAGCTACTCAAAGATAG 882 0.356 MNSLIANEILHMKPIHFFLIIPAQSLHLGKLMIPRKFVAKYGECLPKTICLKTPNGVNWKLNLVKSDGKLWFQKGWKEFAKYHSLADGHLLLFKYEKTCHFHVHIFDKSAFEINYPFTRLEAKRVKPSNHEDCRASQKRKVNSSFEIGSSSCVKGKQVITDADKVSTLERAKSLRTCNPSFVLVMGASYVEHHFLLTIPAMFGKKHFDLNKKRGDIYFQVSNGIVWPARYRIRMSSTGLRFELSSGWKTFAIDNNLKVGDVCNFELILSTNMTFQVHIFRATDNLMKEEATQR 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04702 293 Gene3D - 158 285 IPR015300 -
Trre5g04702 293 ProSiteProfiles B3 DNA-binding domain profile. 181 282 IPR003340 GO:0003677
Trre5g04702 293 CDD B3_DNA 16 107 IPR003340 GO:0003677
Trre5g04702 293 Gene3D - 9 110 IPR015300 -
Trre5g04702 293 Pfam B3 DNA binding domain 181 281 IPR003340 GO:0003677
Trre5g04702 293 Pfam B3 DNA binding domain 21 108 IPR003340 GO:0003677
Trre5g04702 293 SUPERFAMILY DNA-binding pseudobarrel domain 11 109 IPR015300 -
Trre5g04702 293 CDD B3_DNA 179 280 IPR003340 GO:0003677
Trre5g04702 293 SUPERFAMILY DNA-binding pseudobarrel domain 177 281 IPR015300 -
Trre5g04702 293 ProSiteProfiles B3 DNA-binding domain profile. 16 109 IPR003340 GO:0003677
Trre5g04702 293 SMART B3_2 181 282 IPR003340 GO:0003677
Trre5g04702 293 SMART B3_2 17 109 IPR003340 GO:0003677
Trre5g04702 293 PANTHER B3 DOMAIN-CONTAINING 13 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04702 Trre-Chr5 48910593 48912342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04702 156 285 B3 DNA Binding Superfamily AT3G18990 30.769 4.97e-13 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre5g04702 B3 1.4e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04702 - - mtr:11434552 448.358