Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04700 ATGAAGTTTGTGAAAAATGGAGTAAGCAATAAATTGCCACCTGGTTTTCGTTTTCAGCCGACAGACGAAGAGCTTGTTTTTCAGTACTTGAAATGTAAAACCTTTTCCTATCAGTTGCCAGCTTCAATCATTCCTGAGATCAATGTCTGCAACTATGATCCTTGGGATTTACCAGGAAATCATGGTGAGCAAGATATGTATTTCTTCAGTGCTAAGGAAGCCAAGTATCGAAATGGCAATCGAATGAACAGATCAACCAAATCCGGCTATTGGAAGGCGAGTGGATCAGATAAGAAAGTTAGTGTTTCTTCATCAATAAGTAATAAAGGAATTGCGGGGATAAGAAAAAGTCTTGTATTTTATCGAGGAAAATCTCCAAATGGAACTCGAACTCATTGGATCATGCATGAATATCGTCTAGTTAGTGTAGAAACTACCGCTTGTAATCAGAGTTTGTATGGAAACGAGATAGGGGATTGGGTTCTATGTCGTATATTCATGAAGAAAAGAAGTAATATAACGATGATGAATACTAATGTTGACGCAGCTCGACCAAAATTCTTTGATTTTATGATGGTACACAACTCATCAGCTCCGAACCCTACTACACATTTTTCTTCATCCTCGTCTTGTTCAAGTTCCGGTGAAGTCTCTTCATCTGAAGAAAGATGCAGATATATATGCTGA 687 0.3799 MKFVKNGVSNKLPPGFRFQPTDEELVFQYLKCKTFSYQLPASIIPEINVCNYDPWDLPGNHGEQDMYFFSAKEAKYRNGNRMNRSTKSGYWKASGSDKKVSVSSSISNKGIAGIRKSLVFYRGKSPNGTRTHWIMHEYRLVSVETTACNQSLYGNEIGDWVLCRIFMKKRSNITMMNTNVDAARPKFFDFMMVHNSSAPNPTTHFSSSSSCSSSGEVSSSEERCRYIC 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04700 228 Pfam No apical meristem (NAM) protein 13 140 IPR003441 GO:0003677|GO:0006355
Trre5g04700 228 ProSiteProfiles NAC domain profile. 12 168 IPR003441 GO:0003677|GO:0006355
Trre5g04700 228 MobiDBLite consensus disorder prediction 200 219 - -
Trre5g04700 228 Gene3D NAC domain 21 173 IPR036093 GO:0003677|GO:0006355
Trre5g04700 228 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 11 199 - -
Trre5g04700 228 SUPERFAMILY NAC domain 9 168 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04700 Trre-Chr5 48906702 48907572 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04700 1 200 NAC Transcription Factor Family AT5G13180 49.558 1.31e-66 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre5g04700 NAM 2.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04700 - - aprc:113868555 282.337