Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04699 ATGGAAAAAATGAAGTTTGTGAAAAATGGAGTAAGCAATAAATTGCCACCTGGTTTTCGTTTTCAGCCGACAGACGAAGAGCTTGTTTTTCAGTACTTGAAATGTAAAACCTTTTCCTATCAGTTGCCAGCTTCAATCATTCCTGAGATCAATGTCTGCAACTATGATCCTTGGGATTTACCAGGAAATCATGGTGAGCAAGATATGTATTTCTTCAGTGCTAAGGAAGCCAAGTATCGAAATGGCAATCGAATGAACAGATCAACCAAATCCGGCTATTGGAAGGCGAGTGGATCAGATAAGAAAGTTAGTGTTTCTTCATCAATAAGTAATAAAGGAATTGCGGGGATAAGAAAAAGTCTTGTATTTTATCGAGGAAAATCTCCAAATGGAACTCGAACTCATTGGATCATGCATGAATATCGTCTAGTTAGTGTAGAAACTACCGCTTGTAATCAGAGTTTGTATGGAAACGAGATAGGGGATTGGGTTCTATGTCGTATATTCATGAAGAAAAGAAGTAATATAACGATGATGAATACTAATGTTGACGCAGCTCGACCAAAATTCTTTGATTTTATGATGGTACACAACTCATCAGCTCCGAACCCTACTACACATTTTTCTTCATCCTCGTCTTGTTCAAGTTCCGGTGAAGTCTCTTCATCTGAAGAAAGATGCAGATATATATGCTGA 696 0.3779 MEKMKFVKNGVSNKLPPGFRFQPTDEELVFQYLKCKTFSYQLPASIIPEINVCNYDPWDLPGNHGEQDMYFFSAKEAKYRNGNRMNRSTKSGYWKASGSDKKVSVSSSISNKGIAGIRKSLVFYRGKSPNGTRTHWIMHEYRLVSVETTACNQSLYGNEIGDWVLCRIFMKKRSNITMMNTNVDAARPKFFDFMMVHNSSAPNPTTHFSSSSSCSSSGEVSSSEERCRYIC 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04699 231 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 14 202 - -
Trre5g04699 231 SUPERFAMILY NAC domain 12 171 IPR036093 GO:0003677|GO:0006355
Trre5g04699 231 MobiDBLite consensus disorder prediction 203 222 - -
Trre5g04699 231 Gene3D NAC domain 24 176 IPR036093 GO:0003677|GO:0006355
Trre5g04699 231 ProSiteProfiles NAC domain profile. 15 171 IPR003441 GO:0003677|GO:0006355
Trre5g04699 231 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04699 Trre-Chr5 48906693 48907572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04699 1 203 NAC Transcription Factor Family AT5G13180 49.345 1.36e-67 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre5g04699 NAM 2.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04699 - - aprc:113868555 288.115