Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04686 ATGGGCAGTATAAAAGGAAAATGTAAGAAGAATGTGATATTAAAGGCATGGCGATCATTTGGAGGTGGAGGTGCAAATAGAAATATGAGGTCACTACTACTTAATAAGGATACTTCAAAATCATTTTCACAAAATGTGAAGGGTAAAATATTAAAAACCCCAAATGGTTGTTTTTCAGTTTATGTTGGACCTCAAAGACAAAGATTTGTTGTAGAGACCAAGTTTGTTAACCACCCATTATTCAAGATGTTACTAGATGAAGCAGAGGTGGAATATGGGTTTCAAAATGATGGCCCTATTAGGCTTCCATGTAATGTTGATTTGTTCTTTAAAGTATTGGCTGAGATGAATAATTTTGAGGAAGAGGATCATATTAATGAGGCTAAGGGAATTTCTTGTTTTTGTTCTTCGAAACCCAGCATCTATTCTTTGTTATATGAATAA 444 0.3378 MGSIKGKCKKNVILKAWRSFGGGGANRNMRSLLLNKDTSKSFSQNVKGKILKTPNGCFSVYVGPQRQRFVVETKFVNHPLFKMLLDEAEVEYGFQNDGPIRLPCNVDLFFKVLAEMNNFEEEDHINEAKGISCFCSSKPSIYSLLYE 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04686 147 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 43 111 IPR003676 GO:0009733
Trre5g04686 147 Pfam Auxin responsive protein 47 114 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04686 Trre-Chr5 48808393 48808836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04686 54 123 Calmodulin-binding Proteins AT3G43120 44.286 1.82e-17 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04686 K14488 - gmx:100789525 134.035