Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04676 ATGGATTGGAATTTGAAAGCATCTTCTTGGGATTTGGAGGGTATAGAAGAAGCAACATTACCCAACATAGAAATAATGGAAGAAGAAGAAGAATCAAACAGATTTGGGAAATTTTCTGTTGATTTAAAGCTTGGTCAAGTTGAGAATTCTGTCACTGATCAATCATCATCATCACCATCACCACTTCCTTTGTGCAAAGATTCTGCTGCTATTGTTGTTTCCAAAATGGCATCATCACCTTCTTGTTCTGGATCTTCTAAAAGAGCTAGAGCTATTAATAATACAACATTATCAGTTTCTTGTCTTGTGGATGGGTGTAATTCTGATCTTAGTAATTGTAGAGATTATCATAGACGTCATAAGGTTTGTGAACTTCATTCCAAAACTCCTGAGGTTACAATTGCTGGCCTTAAGCAAAGATTCTGCCAACAGTGTAGCAGGTTTCATTCATTGGACCAATTCGATGAAAGAAAAAGAAGCTGTAGGAAACGTTTAGATGGACACAACCGAAGGAGAAGAAAACCTCAACCAGAACCTATCACAAGACCTGCTGGTAGTTTTTTGTCCAATTACCAAGGCACCCAGTTGCTACCTTTTTCAAGTTCTACTAGCATGGTGAATTCAGCTTGGAGTAGTAGCAGACTCATTACTTCCTGTGAAAGTAGTAGACTTCACATCAACAACAATCAACAACACCAACAACTACATGTGGTTGATAAACAAGACCATTTTCTTGGTTCTACGACACCAACCTATGGAGAAGGAAAACAACTTCAATTCTTACACAATGACAACAACAATAATCCTTCACTTCATAACCAAAACACATCTCTTCTCAGGACAAGTAGCAAAATGTTTTGTGATAGCTTAACAACTTCTTCAGTACATGAATCTCCTTGTGCTCTCTCTCTTCTGTCATCATCACAGACACATACATCTCATTCAATGGTGCAGCAGCCTCATTCAATGTCTCTTATGCAGCCACCCTTAGGATTGAGCCTGCATGGCAACAACAACAACAGCAGCTTTGAGTCTATGAATAGAGTGTTGGTCCCAAATGGGAGTGAGAGTGATCATTGTTCCTCATTGTATAACATTGGTTCTGATGGATCACAAAGCAATGATGCACCTCAACTATTTCCCTATCAATGGGAATAG 1158 0.3886 MDWNLKASSWDLEGIEEATLPNIEIMEEEEESNRFGKFSVDLKLGQVENSVTDQSSSSPSPLPLCKDSAAIVVSKMASSPSCSGSSKRARAINNTTLSVSCLVDGCNSDLSNCRDYHRRHKVCELHSKTPEVTIAGLKQRFCQQCSRFHSLDQFDERKRSCRKRLDGHNRRRRKPQPEPITRPAGSFLSNYQGTQLLPFSSSTSMVNSAWSSSRLITSCESSRLHINNNQQHQQLHVVDKQDHFLGSTTPTYGEGKQLQFLHNDNNNNPSLHNQNTSLLRTSSKMFCDSLTTSSVHESPCALSLLSSSQTHTSHSMVQQPHSMSLMQPPLGLSLHGNNNNSSFESMNRVLVPNGSESDHCSSLYNIGSDGSQSNDAPQLFPYQWE 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04676 385 ProSiteProfiles Zinc finger SBP-type profile. 98 175 IPR004333 GO:0003677
Trre5g04676 385 MobiDBLite consensus disorder prediction 162 187 - -
Trre5g04676 385 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 49 361 IPR044817 GO:0003677
Trre5g04676 385 FunFam Squamosa promoter-binding-like protein 14 92 162 - -
Trre5g04676 385 Gene3D - 92 162 IPR036893 GO:0003677|GO:0005634
Trre5g04676 385 Pfam SBP domain 101 174 IPR004333 GO:0003677
Trre5g04676 385 SUPERFAMILY SBT domain 99 180 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04676 Trre-Chr5 48731428 48734881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04676 1 385 SBP-box Gene Family AT5G50670 39.952 1.88e-64 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trre5g04676 SBP 4.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04676 - - gmx:100787407 388.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04676 5 48731428 48734881 Trre5g04676 5 48731428 48734881 ECH
Trre7g05386 7 59927855 59931776 Trre5g04676 5 48731428 48734881 PCT