Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04664 ATGGAGAACAACAACAACAACCAACAATATCCGACGCCACAACCCACGGCGGTTACATCCGCAGCACCATTCCAACATCTCCTCCAACAACAACAACAACAGCTTCAAATGTTCTGGTCATACCAAAGACAAGAAATCGAACACGTTAACGATTTCAAAAACCACCAACTTCCATTAGCACGCATTAAGAAAATCATGAAAGCCGATGAAGATGTTCGTATGATCTCTGCTGAAGCACCAATTCTTTTCGCCAAAGCATGTGAACTTTTCATTCTTGAACTCACCATTCGTTCATGGCTTCATGCTGAAGAAAATAAACGAAGAACATTACAGAAAAATGACATTGCTGCTGCTATTACTCGTACAGATATTTTTGATTTTTTGGTTGATATTGTTCCTAGAGATGAGATTAAAGAAGAAGGTACTATTGTTGGTGCTACTGCTAGTGGTGTCCCTTATTATTATCCACCTATTGGTCAGCCTGCTGGTGGAATGATGATTGGTCGTCCGGCTGTTGATCCGGCTACCGGTGTTTATGTTCAGCCTCCTTCTCAGGCTTGGCAGTCTGTTTGGCAGACTGGTGCTGATGATGGTTCGTATGCGGCTGCCGGTGGTAGCGGTGGTCAGCACAATGTCGATGGCCAGAGCGGCTGA 654 0.4434 MENNNNNQQYPTPQPTAVTSAAPFQHLLQQQQQQLQMFWSYQRQEIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKEEGTIVGATASGVPYYYPPIGQPAGGMMIGRPAVDPATGVYVQPPSQAWQSVWQTGADDGSYAAAGGSGGQHNVDGQSG 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04664 217 SUPERFAMILY Histone-fold 7 128 IPR009072 GO:0046982
Trre5g04664 217 Pfam Core histone H2A/H2B/H3/H4 11 119 IPR007125 GO:0003677
Trre5g04664 217 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 29 150 - -
Trre5g04664 217 MobiDBLite consensus disorder prediction 198 217 - -
Trre5g04664 217 FunFam Nuclear transcription factor Y subunit gamma 25 134 - -
Trre5g04664 217 Gene3D Histone, subunit A 21 134 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04664 Trre-Chr5 48663114 48665771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04664 17 215 CCAAT-HAP5 Transcription Factor Family AT3G48590 80.861 2.41e-104 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Trre5g04664 Histone 1.6e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04664 - - pop:7454724 337.806