Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04654 ATGGAGTCTGAAACTCACATTCACACTCAGAGAGATCGAAGAACAGACGCTCTTGGAGATCTCCGAGTTCTTCCCGACGAAACCATCTGCTCAATTTTGGAACGACTCACTCCTCGAGATGCTGCTCGCGTCGCTTGCGTTAGCAGTGTGATGTATATACTATCCAATGAAGAACCATTATGGATGACTCTATGCCTAAGAGGAGCATCTGGTTTTCTTCAATACAAAGGCTCTTGGAAGAAAACTGCTCTGCATAATGAGAATCTTCCAGACAAGTACAAAGAGTGGCATAGACCGCCTTTACATTTTGATGGATTCAACTCTTTATTTTTGTATCGGAGGTTATACCGGTGTCATACCACATTGGATACATTTTATACAGTCGGTGGAAATGTGGAAAGAATAAAAGACATCTCATTGAAGGACTTCTATAATGAGTATGACATGAAGAAACCGGTCATGCTTAATGGACTGGCGGATACATGGCCTGCCAGGCATAAATGGACAACTGATCAGCTGTTACTAGACTATGGAGACATAGCGTTTAAAATTTCTCAAAGGAGTTCCAAAAAGGTCTCCATGAAGTTCAAGGATTATGTCTCCTATATGGAAGTTCAACATGATGAAGACCCATTATATATTTTTGACGAAAAGTTTGGCGAACATGCACCTAGCTTATTGAAGGATTACTCTGTGCCTCATCTTTTTCAAGAAGACTTGTTTGATATCTTAGATACGGATAAACGACCATCCTATAGGTGGCTCATAATTGGACCACAGAGATCTGGTGCCTCTTGGCATGTTGATCCAGCTCTTACAAGTGCATGGAATACTCTTCTTTCTGGCCGTAAAAGGTGGGCATTATATCCACCTGGAAAAGTGCCTTTAGGTGTGACGGTACATGTTAATGAAGAAGATGGCGATGTCAATATTGAGACTCCATCATCACTGCAGTGGTGGCTAGATTTTTATCCTCTTCTTGCTGATGAAGACAAGCCGATTGAATGTACACAACTTCCTGGAGAGACAATTTATGTTCCGAGTGGATGGTGGCACTGTATTTTAAATTTGGAAACAACTATTGCAGTCACACAGAATTTTGTGAATTCTAAAAACTTTGAATTTGTATGTTTGGATATGGCACCTGGTTATCGACATAAAGGAGTTTGTCGTGTAGGTTTGCTTGCTCTTGAAGAAGATGTTTATGAAAATGTCATGCAGAACATGTCATGTAATGAAGAAAATTTAAGTTACTCTGATTTGTCAAGGAAAGAGAAAAGATCCAAAACTCTGAAAGATGTAGATGATCTATGTTTTGAAAGAGAAATAAGCGGTGTATCTAGAAGCTATAATTTATGGAAAGGTGGATTTTCTTATGATATAAACTTCTTGTCCATGTTTTTGGATAAGGATAGAGACCACTACAGTTCTGAGTGGAGCTCAGGCAACAGCATTGGACAACGAGAACTAAGAGAATGGTTATCCAAACTTTGGATTCAAAAGCCAGATATGAGAGATCTAATATGGAAGGGAGCATGTATTGCACTAAATGCGGACAAGTGGTTAGAATGCTTGTCAAAAATTTGTGCCTTCAACAATCTGCCCCCTCCCACTGATGACGAAAGGCTTCCTGTTGGTACGGGTAGCAATCCTGTTTATCTCGTGGGGAACAATGTTGTTAAAATTTTTGTTGAAGGAGGACTGGAAGCATCGCTTTACGGTTTAGGCACAGAGCTAGAGTTTTATACTCTGCTGCTTGAAGCCGACTCCCCTCTCAGGAAACATATTCCTAGTGTTCTGGCCAGTGGGGTTGTTTATCTTGAAGACGGATCCTATAACAATTTAAGTTGGGATGGCAAAGGAGTTCCAAACGTCATTCTGAAGAGCAATATCATTACAAACAAATGTGATGTTCATGGTTTCCCATTTGGGGCATGGGGCAAGAAACTGCTAGAGAATAGGAATGCTGGGATTTCGGTGGACGGATCAGTTAGTTTAGCCGATAACTCAAGCATATGGCCATATATGATAACCAAGCGATGTGAAGGGAATATGTTTGCTGACTTAAGAGACAGATTATCATGGGAAGATACAACAAACTTGGCTTCCTTCTTGGGGGAGCAACTGCGCCACCTTCATCTTTTGCCACATCCACCTTTAAATAATTCATTTATATCTGATATTGAATGTGAATTAAGCGGGTCTGATGCGAATGGTTGTGTTGCAAATGCTAATGGTAAATCAAACAATGCAGCAGAATGGGGAATCTTCATCAGAATCTTAACAAAGAAGAGGAAGGATGTCTCAAGCCGTTTGACCAAGTGGGGAGATCCAATTCCTAGCAAACTGATTGAGAAAATTGATGAATATATCCCATCTGATTTATCTAAGCTGCTAAATATAAATGAGAATTTCTCAAGTGGTGCCTCTAAACCTTGCTCCTGGATACACACTGACATTATGGATGATAATATTTACATGGAACCATCATCGGTTTGCTCTACCTCTAGTGGAAATACAGAAGATGCTGCCCAGGCGGGCAATGGTTTATTGAGTAACCATGTTGGAGTGAAATCCTGGTCTCCTAGTTACATCCTTGATTTCAGTGATCTTTCTATGGGTGATCCTATTTTTGATTTGATACCAATTTATTTAGACGTGTTTAGAGGCGATTCATATCTCCTTAAGCAATTTTTAGAAAGTTACAAACTTCCTTTTTCTTGCAACATATCTAAGTACGAGTCAGCAGAGGGTGGTCAAAAGTTCGCTCGACTTTCATATGTTGCCATGTGTTATTGTATTTTACATGATGATAATGTATTGGGAGCTATTTTTAGCATATGGGATGAACTGAGATCATCAGAGTCATGGGAAGAAGTTGAGATGACAGTGTGGGGAGAACTGAACAATTACAAAGGCTTTCTTTGA 2928 0.3996 MESETHIHTQRDRRTDALGDLRVLPDETICSILERLTPRDAARVACVSSVMYILSNEEPLWMTLCLRGASGFLQYKGSWKKTALHNENLPDKYKEWHRPPLHFDGFNSLFLYRRLYRCHTTLDTFYTVGGNVERIKDISLKDFYNEYDMKKPVMLNGLADTWPARHKWTTDQLLLDYGDIAFKISQRSSKKVSMKFKDYVSYMEVQHDEDPLYIFDEKFGEHAPSLLKDYSVPHLFQEDLFDILDTDKRPSYRWLIIGPQRSGASWHVDPALTSAWNTLLSGRKRWALYPPGKVPLGVTVHVNEEDGDVNIETPSSLQWWLDFYPLLADEDKPIECTQLPGETIYVPSGWWHCILNLETTIAVTQNFVNSKNFEFVCLDMAPGYRHKGVCRVGLLALEEDVYENVMQNMSCNEENLSYSDLSRKEKRSKTLKDVDDLCFEREISGVSRSYNLWKGGFSYDINFLSMFLDKDRDHYSSEWSSGNSIGQRELREWLSKLWIQKPDMRDLIWKGACIALNADKWLECLSKICAFNNLPPPTDDERLPVGTGSNPVYLVGNNVVKIFVEGGLEASLYGLGTELEFYTLLLEADSPLRKHIPSVLASGVVYLEDGSYNNLSWDGKGVPNVILKSNIITNKCDVHGFPFGAWGKKLLENRNAGISVDGSVSLADNSSIWPYMITKRCEGNMFADLRDRLSWEDTTNLASFLGEQLRHLHLLPHPPLNNSFISDIECELSGSDANGCVANANGKSNNAAEWGIFIRILTKKRKDVSSRLTKWGDPIPSKLIEKIDEYIPSDLSKLLNINENFSSGASKPCSWIHTDIMDDNIYMEPSSVCSTSSGNTEDAAQAGNGLLSNHVGVKSWSPSYILDFSDLSMGDPIFDLIPIYLDVFRGDSYLLKQFLESYKLPFSCNISKYESAEGGQKFARLSYVAMCYCILHDDNVLGAIFSIWDELRSSESWEEVEMTVWGELNNYKGFL 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04654 975 Gene3D - 6 95 - -
Trre5g04654 975 ProSiteProfiles F-box domain profile. 18 64 IPR001810 GO:0005515
Trre5g04654 975 FunFam F-box protein At1g78280 112 369 - -
Trre5g04654 975 Gene3D Cupin 114 369 - -
Trre5g04654 975 SMART fbox_2 24 64 IPR001810 GO:0005515
Trre5g04654 975 Pfam Cupin-like domain 150 370 IPR041667 -
Trre5g04654 975 SUPERFAMILY F-box domain 14 71 IPR036047 GO:0005515
Trre5g04654 975 SUPERFAMILY Protein kinase-like (PK-like) 673 905 IPR011009 -
Trre5g04654 975 ProSiteProfiles JmjC domain profile. 221 384 IPR003347 -
Trre5g04654 975 SMART cupin_9 212 379 IPR003347 -
Trre5g04654 975 SUPERFAMILY Clavaminate synthase-like 120 376 - -
Trre5g04654 975 Pfam F-box-like 23 67 IPR001810 GO:0005515
Trre5g04654 975 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 18 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04654 Trre-Chr5 48504724 48519392 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04654 10 971 Glycosyltransferase AT1G78280 61.277 0.0 1205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre5g04654 Cupin_8 8e-21 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04654 - - tpra:123918034 1952.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04654 5 48504724 48519392 Trre5g04654 5 48504724 48519392 ECH