Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04642 ATGCCGATCATCAAAAGCATTACAAAAGAATATATTGGCAAGCCAATAAGATGCAAAGCTGCAATATGCAGAAAATCAGGTGAACCTCTTGTTATAGAAGAAGTTGAATTAGACCCACCAAAATCATGGGAAGTACGGATCAAAATTTTATGCACATCTCTTTGCCATTCTGATCTTACCTATTGGAAAATGGATCCTTCTACACCTGCCGCTGTGTTTCCTAGAATTTTAGGACACGAAGCCGTGGGTGTTGTGGAAAGTGTAGGGGAACACGTAGAAGAAGTGAAAGAAGGCGAGTTAGTGGTACCGGTGTTTCTCCCAAACTGTGGAGAATGCAGAGACTGCAAAAGCAGAAAGAGCAACAATTGCAGCAAGTTTGGGAGCAAATTCCAGTATGGCATGCCAAGAGATGGAACAAGCAGGTTTAGGGACATTAATGGAGAAGTGGTGCACCATTTATTTGGTGTCAGCAGTTTTTCTGAGTATACTGTGGTGGATGTAACACATTTGGTTAAAATTGTACAAGATTTTCCTCTTGATAAGGCTTGCTTGCTCAGTTGCGGTGTTTCCACAGGGGTAGGGGCCGCGTGGAAGGTGGCTGATGTAGAAAAAGGGTCCACAGTGGCTATTTTTGGGCTTGGTGCTGTAGGCCTAGCTGTTGCTCTAGGAGCAAAACAAAGAGGAGCATCGATGATTATAGGCGTCGATTTAAATCAGGATAAATTTGAAATAGGAAAACAATTTGGTGTAACTGATTTTGTGAATCCCTCCGCTTACAAGGAGAAATCAGTCAGCGAGGTGATTAAGGATCTGACAAATGGAGGGGCCGATTATTGCTTCGAGTGCATAGGCTTAGCATCACTAATGGCAGAGGCTTTCAATAGCAGTCGACAAGGTTGGGGGAAAACAGTGATAATAGGTGTGGAAATGCACGGTTCACCATTGACTTTAAGTCCTAATACCATACTAAGAGGTAGAACTATCACTGGATCACTATTTGGAGGCATCAAAGCAAAATCTGATCTTCCCTAG 1032 0.4293 MPIIKSITKEYIGKPIRCKAAICRKSGEPLVIEEVELDPPKSWEVRIKILCTSLCHSDLTYWKMDPSTPAAVFPRILGHEAVGVVESVGEHVEEVKEGELVVPVFLPNCGECRDCKSRKSNNCSKFGSKFQYGMPRDGTSRFRDINGEVVHHLFGVSSFSEYTVVDVTHLVKIVQDFPLDKACLLSCGVSTGVGAAWKVADVEKGSTVAIFGLGAVGLAVALGAKQRGASMIIGVDLNQDKFEIGKQFGVTDFVNPSAYKEKSVSEVIKDLTNGGADYCFECIGLASLMAEAFNSSRQGWGKTVIIGVEMHGSPLTLSPNTILRGRTITGSLFGGIKAKSDLP 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04642 343 FunFam alcohol dehydrogenase 1-like isoform X1 26 191 - -
Trre5g04642 343 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 178 340 IPR036291 -
Trre5g04642 343 Gene3D - 22 343 - -
Trre5g04642 343 Pfam Zinc-binding dehydrogenase 215 335 IPR013149 -
Trre5g04642 343 Gene3D - 192 331 - -
Trre5g04642 343 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 78 92 IPR002328 GO:0008270|GO:0016491
Trre5g04642 343 FunFam S-(hydroxymethyl)glutathione dehydrogenase 192 331 - -
Trre5g04642 343 Pfam Alcohol dehydrogenase GroES-like domain 44 173 IPR013154 -
Trre5g04642 343 SUPERFAMILY GroES-like 12 211 IPR011032 -
Trre5g04642 343 PANTHER ALCOHOL DEHYDROGENASE 13 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04642 Trre-Chr5 48397719 48407814 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04642 44 187 Monolignol Biosynthesis Gene Families AT4G37970 30.345 4.73e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04642 K00121 - aew:130759183 486.878