Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04640 ATGCCGATCATCAAAAGCATTACAAGAGAATATATTGGCAAGCCAATAAGATGCAAAGCTGCAATATGTAGAAAATCAGGTGAACCTCTTGTTATAGAAGAAGTTGAATTAGACCCACCAAAATCATGGGAAGTACGGATCAAAATTTTATCCACATCTCTCTGCCATTCTGATCTCACCTTTTGGAAAATGGATTCTTCTGTACCTGCAGCCGTGTTTCCTAGAATTTTAGGACACGAAGCCGTGGGAGTTGTGGAGAGTGTAGGTGAGTATGTGGAAGAAGTGAAAGAAGGCGATTTAGTGGTGCCGGTGTTTCTTGCAAACTGTGGAGAATGCAGAGACTGTGAAAGCACAAAAAGCAACAATTGCAGCAAGTTTGGGAGCAATCCATTCCAGTATCAGTATGGGATGCCAAGAGATGGAACAAGCAGGTTTAGGGACATTAATGGAGAAGTGGTGCACCATTTATTTGGTGTCAGCAGTTTTTCTGAGTATACTGTGGTGGATGTAACACATTTGGTTAAAATTGTACAAGATTTTCCTCTTGATAAGGCTTGCTTGCTCAGTTGCGGTGTTTCCACAGGGGTAGGGGCCGCGTGGAAGGTGGCTGACGTAGAAAAAGGGTCCAGGGTGGCTATTTTTGGGCTTGGTGCTGCAGGCCTAGCGGTTGCTCTAGGAGCCAAACAAAGAGGAGCGTCGATGATTATAGGCATCGATTTAAATCAGGATAAATTTGAAATAGGAAAACAATTTGGAGTAACTGATTTTGTGAATCCCTCCACTTGCAAGGAGAAGTCGGTCAGCGAGGTGATTAAGGATATGACAAATGGAGGAGCCGATTATTGCTTCGAGTGCATAGGCTTGGCATCACTAATGGCAGAGGCTTTTAATAGTAGCCGAGAAGGTTGGGGGAAAACAGTGATAATAGGGGTGGAAATGCACGGTTCACCATTGACTTTAAGTCCTTATACCATACTACATGGCAGAACTATAACTGGATCACTATTTGGAGGCATCAAAGCAAAATCTGATCTTCCCCTCCTTGCTCAAAAGTACTTAGACAAAGAGCTTAACTTGGATGGGTTTATAACACAAGAAGTGGACTTCAAAGACATTAACAAAGCTTTTGACTATATGGTGCAAGGAAAGAGCATTCGTTGCATTATAAGGATGGATCAATAA 1182 0.4255 MPIIKSITREYIGKPIRCKAAICRKSGEPLVIEEVELDPPKSWEVRIKILSTSLCHSDLTFWKMDSSVPAAVFPRILGHEAVGVVESVGEYVEEVKEGDLVVPVFLANCGECRDCESTKSNNCSKFGSNPFQYQYGMPRDGTSRFRDINGEVVHHLFGVSSFSEYTVVDVTHLVKIVQDFPLDKACLLSCGVSTGVGAAWKVADVEKGSRVAIFGLGAAGLAVALGAKQRGASMIIGIDLNQDKFEIGKQFGVTDFVNPSTCKEKSVSEVIKDMTNGGADYCFECIGLASLMAEAFNSSREGWGKTVIIGVEMHGSPLTLSPYTILHGRTITGSLFGGIKAKSDLPLLAQKYLDKELNLDGFITQEVDFKDINKAFDYMVQGKSIRCIIRMDQ 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04640 393 Pfam Zinc-binding dehydrogenase 220 339 IPR013149 -
Trre5g04640 393 Gene3D - 195 334 - -
Trre5g04640 393 SUPERFAMILY GroES-like 13 200 IPR011032 -
Trre5g04640 393 Gene3D - 22 387 - -
Trre5g04640 393 SUPERFAMILY GroES-like 341 390 IPR011032 -
Trre5g04640 393 FunFam Alcohol dehydrogenase 6 21 207 - -
Trre5g04640 393 Pfam Alcohol dehydrogenase GroES-like domain 44 176 IPR013154 -
Trre5g04640 393 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 78 92 IPR002328 GO:0008270|GO:0016491
Trre5g04640 393 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 181 354 IPR036291 -
Trre5g04640 393 PANTHER ALCOHOL DEHYDROGENASE 13 389 - -
Trre5g04640 393 FunFam S-(hydroxymethyl)glutathione dehydrogenase 195 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04640 Trre-Chr5 48381707 48391431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04640 44 381 Monolignol Biosynthesis Gene Families AT2G21730 27.114 1.31e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04640 K00121 - mnt:21395940 559.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04640 5 48381707 48391431 Trre5g04640 5 48381707 48391431 ECH