Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04627 ATGGCGTTACTACGCACTATTCCATGTTCAACTCAATTATCCACAAAACAACACTTCGAATTTGAATACAAGAAACATTCTTCTACAATTCCCTTCCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTTCACTCTCTTCGTCTATCCATTTCTCATACTCCAACAACCCTTATCAGAACCAAACAACACTCCAATTCTACTCTCAGATTCACCTCTATTTCAGAACAAGTAACCACTCAAGAACAACAACAAGCCACAGAAGAACAAAAAGAAGAAGAACTGTCTCCTACTAGGTTGCTTGTTCAGAATATTCCATTTACAAGTACTGCCGAAGATCTTCGTACTTTGTTTGAAAAGTACGGAAAAGTTGTCGATGTTGAGCTTTCTAAGTATGGTAAGAATAAGAACAAACATAGGGGTTTCGCTTTTGTGGAAATGAGTTCCCCTGAAGAAGCTCTTGCTGCTCTCAATAGTCTTCAATCTTATGAGTTTGAGGGCCGTGTAATAAATCTCAAATATGCTCGGCCTAAAAAGGAGAAAACACTGCCATCAGCTGAACGAACGTTGTTTGTTGGAAATTTGTCCTTTGGAACAAGGGCTAAAGATCTCAGAGAGTTTTTTGATTCGGGAACTAGTAAAGTTGTTTCTGCAGATGTTGTATTTCGTGCTACTGGTTCTTATGGATTTGTGTCCTTCAAGACCAAGAAAGAAGCTGACGAAGCTCTTTCCGAGTTTCAAGGAAAGATTTTGTTGGGAAGGCCAATTAGGGTTGCACCTGTTAAGCAAACTGTTAAACCGGCATAG 807 0.3903 MALLRTIPCSTQLSTKQHFEFEYKKHSSTIPFLSSSSSSSSSSFHSLRLSISHTPTTLIRTKQHSNSTLRFTSISEQVTTQEQQQATEEQKEEELSPTRLLVQNIPFTSTAEDLRTLFEKYGKVVDVELSKYGKNKNKHRGFAFVEMSSPEEALAALNSLQSYEFEGRVINLKYARPKKEKTLPSAERTLFVGNLSFGTRAKDLREFFDSGTSKVVSADVVFRATGSYGFVSFKTKKEADEALSEFQGKILLGRPIRVAPVKQTVKPA 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04627 268 SUPERFAMILY RNA-binding domain, RBD 83 181 IPR035979 GO:0003676
Trre5g04627 268 SMART rrm1_1 189 259 IPR000504 GO:0003723
Trre5g04627 268 SMART rrm1_1 99 173 IPR000504 GO:0003723
Trre5g04627 268 PANTHER OS02G0815200 PROTEIN 20 260 - -
Trre5g04627 268 MobiDBLite consensus disorder prediction 76 97 - -
Trre5g04627 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 98 177 IPR000504 GO:0003723
Trre5g04627 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 188 263 IPR000504 GO:0003723
Trre5g04627 268 Gene3D - 72 181 IPR012677 -
Trre5g04627 268 Gene3D - 182 267 IPR012677 -
Trre5g04627 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 100 170 IPR000504 GO:0003723
Trre5g04627 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 190 257 IPR000504 GO:0003723
Trre5g04627 268 SUPERFAMILY RNA-binding domain, RBD 185 262 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04627 Trre-Chr5 48291474 48293829 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04627 98 260 Eukaryotic Initiation Factors Gene Family AT4G34110 25.301 3.44e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04627 - - gmx:100790439 234.572