Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04626 ATGGCACTACTACGAACTATTCCATGTTCAACTCAATTTTCCACAAAACAACACTTCGATTTTGAAAACAAGAAACATTCTTCTACTAATCCCTTCTTTTCTTCTTCTTCCTTTCACTCTCCTCTTCGTCTATCCATTTCTCATCATACTCCAACAACAACCTTTATCAGAACCAAACAACACTCTAATTCTACTCTCACATTCACCTCTACTTCAGAACAAGTAACCACCCAAGAACAACAACAAGACACAGAAGAACAAAAAGAAGAAGAAGTGTCTCCTACTAGGTTGCTTGCTCAGAATTTTCCATGGACTAGTACTGCCCAAGATGTTCGTACTTTGTTTGAAAAATACGGAAAAGTTGTTGATGTTGAGCTTTCTATGTATAATAAGTACAAAAACAGGGGTTTAGCTTTTGTGGAAATGGGTTCCCCTGAAGAAGCTCTTGCTGCTCTCAATGCTCTTCAATCGTATGAGTTTGAGGGCCGTGTAATAAATCTCAAATATGCTCGGCCTAAAAAGGAGAAAACACTGCCACCAGTTGAACGAACGCCAATAACATTTAAGTTGTTTGTTGCAAATTTGTCCTATGAAACAAGGGCTAAAGATCTCAGAGAGTTTTTTGATTCGGGAACTAGTAAAGTTGTTTCTGCAGATGTTGTATTTCGCGAGAATCCAAGAAGGCCTGCTGGTTATGGATTTGTGTCCTTCAAGACCAAGAAAGAAGCTGATGAAGCTCTTTCCGAGTTTCAAGGAAAGATTTTGTTGGGAAGGCCAATTAGGGTTGCACCTGGTAAGCGAACTGTTAAACCGACAGAGGAGAGTGCAGGATCCGAAGATACATCTTCTGAGTCGAGCGTCAATGAGGAGGCAGAAGTTAACAAAGCTGATTGA 894 0.4004 MALLRTIPCSTQFSTKQHFDFENKKHSSTNPFFSSSSFHSPLRLSISHHTPTTTFIRTKQHSNSTLTFTSTSEQVTTQEQQQDTEEQKEEEVSPTRLLAQNFPWTSTAQDVRTLFEKYGKVVDVELSMYNKYKNRGLAFVEMGSPEEALAALNALQSYEFEGRVINLKYARPKKEKTLPPVERTPITFKLFVANLSYETRAKDLREFFDSGTSKVVSADVVFRENPRRPAGYGFVSFKTKKEADEALSEFQGKILLGRPIRVAPGKRTVKPTEESAGSEDTSSESSVNEEAEVNKAD 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04626 297 SUPERFAMILY RNA-binding domain, RBD 94 264 IPR035979 GO:0003676
Trre5g04626 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 188 267 IPR000504 GO:0003723
Trre5g04626 297 PANTHER OS02G0815200 PROTEIN 25 264 - -
Trre5g04626 297 Coils Coil 296 297 - -
Trre5g04626 297 MobiDBLite consensus disorder prediction 261 297 - -
Trre5g04626 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 190 261 IPR000504 GO:0003723
Trre5g04626 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 100 165 IPR000504 GO:0003723
Trre5g04626 297 CDD RRM_SF 101 168 - -
Trre5g04626 297 Gene3D - 180 292 IPR012677 -
Trre5g04626 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 172 IPR000504 GO:0003723
Trre5g04626 297 MobiDBLite consensus disorder prediction 69 94 - -
Trre5g04626 297 SMART rrm1_1 96 168 IPR000504 GO:0003723
Trre5g04626 297 SMART rrm1_1 189 263 IPR000504 GO:0003723
Trre5g04626 297 Gene3D - 56 179 IPR012677 -
Trre5g04626 297 MobiDBLite consensus disorder prediction 275 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04626 Trre-Chr5 48285937 48287869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04626 95 267 Eukaryotic Initiation Factors Gene Family AT3G16380 29.121 2.20e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04626 - - gmx:100790439 290.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04626 5 48285937 48287869 Trre5g04626 5 48285937 48287869 ECH