Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04623 ATGGCACTTGAAACTGTGGTTTACCCACAAGATCCATTTAATTATTGTTACAAAGATAATTACTTCAACTCATTAAGCAATGATTATGTCACTCTTCAAGCTGAAGAACAAGAGAATGTTCTCCTAGGAATCATCAACAACAACGTTGAACAACAACAACAACAACAAAATCTACATGCAAATTATGATTCTTGTTCTGTTAAAGATCAATGGCCAGAATATTCACACTCTTCATCTCCTGAAATCTGCACCGTTGATCAAACTATAACAGCACCTTCATTACTTCCTCTTTCTTCTACCACCATGGAAGAAGCTACTACAGCAGCAGCAACTGCCACGTGTCGAAGAAAACGGCGTCGTATTAAGAGTGCAAAGAACAAAGAAGAGATTGAAAATCAAAGGATGACTCACATTACTGTTGAAAGAAATCGAAGGAAACAAATGAATGAATACTTGAATGTGCTTCGATCTTTGATGCCTTCTTCTTATGTTCAAAGGGGTGACCAAGCTTCAATTATTGGTGGAGCAATAAACTTTGTGAAAGAGTTAGAACAACTTCTACAATCCATGGGGGGCCAAAAGAAAACACAAGAGAATATAGGTTTAAATAATGGACCACCTTTTTCTGAGTTCTTCACTTTTCCTCAGTACACAACAAGTGCAACAACAACAACATCTAACAACATGGTCACAATGGAACAAAAACAATGGGCTGTTGCAGACATTGAAGTTACAATGGTAGATAGTCATGCTAACATGAAAATTATGTCCAAGAAAAAAACAGGACAACTTATGAAGATTGTTGTTGGGTTACAAAATCTTAGGCTTACAATTCTTCATCTCAATGTTACCACTTTGGATGATATGGTCCTTTACTCAATTAGTGTCAAGGTAGAGGAGGGGAGTCAGCTGAATAGTGTGGATGAAATTGCGGCTGCTGTGAATCAACTATTAAGGAACGTCCAACAAGAACTGGATTATCAACTAAATTGA 993 0.3706 MALETVVYPQDPFNYCYKDNYFNSLSNDYVTLQAEEQENVLLGIINNNVEQQQQQQNLHANYDSCSVKDQWPEYSHSSSPEICTVDQTITAPSLLPLSSTTMEEATTAAATATCRRKRRRIKSAKNKEEIENQRMTHITVERNRRKQMNEYLNVLRSLMPSSYVQRGDQASIIGGAINFVKELEQLLQSMGGQKKTQENIGLNNGPPFSEFFTFPQYTTSATTTTSNNMVTMEQKQWAVADIEVTMVDSHANMKIMSKKKTGQLMKIVVGLQNLRLTILHLNVTTLDDMVLYSISVKVEEGSQLNSVDEIAAAVNQLLRNVQQELDYQLN 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04623 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 132 195 IPR036638 GO:0046983
Trre5g04623 330 PANTHER MAX DIMERIZATION, MAD 65 321 - -
Trre5g04623 330 CDD bHLH_AtFAMA_like 135 198 - -
Trre5g04623 330 Gene3D - 122 199 IPR036638 GO:0046983
Trre5g04623 330 SMART finulus 138 189 IPR011598 GO:0046983
Trre5g04623 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 132 183 IPR011598 GO:0046983
Trre5g04623 330 Pfam Helix-loop-helix DNA-binding domain 133 184 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04623 Trre-Chr5 48261522 48263681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04623 1 298 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 46.984 7.07e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre5g04623 HLH 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04623 - - gmx:100805420 360.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04623 5 48261522 48263681 Trre5g04623 5 48261522 48263681 ECH
Trre9g03001 9 38219949 38225199 Trre5g04623 5 48261522 48263681 PCT