Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04621 ATGAACACTTTCCCACTCAAACTTCACTTCAATTTCAATCATGCCTTTCCTTACCTTTTCCTCCTGCTCCTCCTTCTCTTCATCATCGTTCTTCCACCACCGGCAACGGCACAGATTCCGAATACAAAACCACCACCACCACCACCGCCGGTGGACAGAATTTCCAAGCTCAAATTCGACAAATCTATGGCAATTGTTTTAGTAATCTTAGTTGCTGTGTTTTTCATCCTCGGTTTTCTCTCCGTCTACACTCGTCAGTGCGCAGAACAGAGAATTAGAGGGAGATTCGATTTATCACTTCCGATCGCCGGAAGTCACCGGAGACACCGTGGACTTGACTCTGAAATCATCGAAACGTTTCCGACGTTTGTTTACTCCACCGTGAAAGGTCATAAAATTGGAAGAGCCGCGCTAGAATGCGCCGTTTGTTTAAACGAATTTCAAGATGATGAAACGCTGCGTTTGATTCCTAATTGTTGCCACGTGTTTCATCCTGAATGTATTGATGCTTGGCTTGTTAATCACTCCACGTGTCCCGTTTGTCGCGCCAATTTAATTCCAAAACCCGGATCCAATTTCGTTTCAACTCAGATTCCGGATTTGTACACATCCGATTCAGATGACCCGACCCGAAATAATTCAGTTGGCGAAAACGTGGCTAATAGAGATACCGTTATTATTACATCTCGTTCTCCTTCTCCTAAGGTGAATTATTCAGTTACACCGAACCGGGCTCGATCGGTTCGGTCAAGTTCAACCGGGTTTAAAATTGGGAACTGGTTACCATTTCCACGGTCGCATTCGACGGGTCATTCACTGGTTCTTGAGGGGGAGAGTCACGAGCGGTTCACATTGAGATTACCGGAGGAAGTGCGAAACCGGTTGATGGGTTCAACGCCGAGTTGTGGTGTTAGTTTTACTCGAGAGGGAAGTGGGAGGAGAGGTTATAGAACGAGGAGTGTGGGATGTAGTGCTCCTGGGAGGAATAATGAGTGGTTTAACCGGCCAGACCGGAGAGGATTTTCTTGGACGCCGCCGTTTATGGGTCGAACCGGTTCGAGTTGGTCGAAGAATAAGTCACCTGGGAAATTGGATGATGTGGGAGAACGGTCTTCTGATCGCTTGTTTGAAGGCGAGAAATTCATAAAGGAATGTCTGCTACTATTTTTGCCTAAACACGCTTAA 1185 0.4641 MNTFPLKLHFNFNHAFPYLFLLLLLLFIIVLPPPATAQIPNTKPPPPPPPVDRISKLKFDKSMAIVLVILVAVFFILGFLSVYTRQCAEQRIRGRFDLSLPIAGSHRRHRGLDSEIIETFPTFVYSTVKGHKIGRAALECAVCLNEFQDDETLRLIPNCCHVFHPECIDAWLVNHSTCPVCRANLIPKPGSNFVSTQIPDLYTSDSDDPTRNNSVGENVANRDTVIITSRSPSPKVNYSVTPNRARSVRSSSTGFKIGNWLPFPRSHSTGHSLVLEGESHERFTLRLPEEVRNRLMGSTPSCGVSFTREGSGRRGYRTRSVGCSAPGRNNEWFNRPDRRGFSWTPPFMGRTGSSWSKNKSPGKLDDVGERSSDRLFEGEKFIKECLLLFLPKHA 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04621 394 SMART ring_2 140 181 IPR001841 -
Trre5g04621 394 SUPERFAMILY RING/U-box 134 189 - -
Trre5g04621 394 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Trre5g04621 394 PANTHER RING FINGER DOMAIN-CONTAINING 37 191 - -
Trre5g04621 394 MobiDBLite consensus disorder prediction 197 220 - -
Trre5g04621 394 CDD RING-H2_EL5-like 139 182 - -
Trre5g04621 394 FunFam E3 ubiquitin-protein ligase ATL6 102 188 - -
Trre5g04621 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 187 IPR013083 -
Trre5g04621 394 Pfam Ring finger domain 139 182 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04621 Trre-Chr5 48237953 48239860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04621 9 351 Rapid Response to Elicitors AT3G05200 37.815 2.89e-61 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04621 K10664 - gmx:100815982 355.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04621 5 48237953 48239860 Trre5g04621 5 48237953 48239860 ECH