Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04611 ATGTTAGTCCAAACTCCAAAGTGTGGAGTGTGGTCCCATTGGGTGTTGAAAAGCCCAGGAAATCAGGGTTTCTATTTCGCACCAAATTTATCTTCTTACATTGCCGCTTTCTTCCCGCCATTCCAAACCCTTCAGAAACAAATTCTCAAGTTTGTTTTACTGAGAATTGCGAGAATTTGGTGGTTGAAGAAACGGTGTAAAGAAGATGCTAGTGAGCCTGTGGGTTCGTTTAAAATTCGACTTGCTGGCATTGCCACTGCGCCGCCTTGTGGGACTTCGTCTTTGATTACATCGATGAAAGGTCTTAAGAGGAAGATAGGTTGTATTGATGTTGCTACTCAGATGGGTAGGAAGAAGAATATTGACGATGATTATGTTTCTGGTGAATCCATCGGGCAAGGAAAATTTGGATCGGTTTATTTGTGTAGGTCTAGGGTTAATGGAGCCGAATTTGCGTGTAAAACTTTGAGGAAAGGAGAGGAGACGGTTCATCGAGAGGTTGAGATAATGCAACATTTGTCTGGACATTCTGGGGTTGTGACATTGCAAGCAGTTTATGAAGAAGCAGAAAGCTTTCATCTTGTTATGGAATTGTGCTCCGGGGGACGATTGATTGATCAAATGGTTAAGGACGGTCCATATTCAGAACAGCGGGCTGCTAACATTTTAAAGGAAGTGATGTTAGTCATTAAATACTGCCATGACATGGGAGTTGTGCATAGAGATATCAAGCCCGAGAATATTCTGCTCACTAAATCAGGAAAATTAAAGCTTGCAGATTTTGGACTCGCCATGAGAATTTCGGAAGGTCAAAATTTGACTGGATTGGCTGGTAGCCCTGCATATGTTGCTCCTGAGGTATTGTTGGGAAAATACTCTGAGAAGGTTGATATATGGAGTGCTGGAGTGCTCCTGCATGCTCTATTGGTTGGCTCTCGTCCATTTCAGGGAGATTCATTGGAAGCTGTTTTTGAAGCTATTAAGACTGTCAAATTAGATTTCCAAGCAGGGATGTGGGAATTGATATCTAAACCTGGACGCGATCTTATTGGGAGAATGCTGACAAGGGATACTTCCGCCAGGATATCAGCTGATGAAGTACTTAGGCATCCATGGATTTTGTTCTACACCGCCCAATCGTTGCCGATGATGCCCATCAAAATAAAATTGAAGAATCAAATTGGTTCAACATGCAGACAGATTGTCGCCGCACGAGAACCTAAATTAGGAGGAAACACAATTGATAATGGCTCACATAGCGAGCTTTTATCTTCCGAAAGTTACAATTCAAATGATCCAGATGAATGTGTGTTGATTGATGCACTTGCCACTGCAATTTCACATGTGAGGATATCTGAACCAAAGAGGAGCAGGTTGTGTAGTCCCACTGGCCCCATAGTTCAGCAAGGTTCATCTAACATGAAAGCTAGCAACCTCTGTAAAGCATTTTAA 1452 0.4242 MLVQTPKCGVWSHWVLKSPGNQGFYFAPNLSSYIAAFFPPFQTLQKQILKFVLLRIARIWWLKKRCKEDASEPVGSFKIRLAGIATAPPCGTSSLITSMKGLKRKIGCIDVATQMGRKKNIDDDYVSGESIGQGKFGSVYLCRSRVNGAEFACKTLRKGEETVHREVEIMQHLSGHSGVVTLQAVYEEAESFHLVMELCSGGRLIDQMVKDGPYSEQRAANILKEVMLVIKYCHDMGVVHRDIKPENILLTKSGKLKLADFGLAMRISEGQNLTGLAGSPAYVAPEVLLGKYSEKVDIWSAGVLLHALLVGSRPFQGDSLEAVFEAIKTVKLDFQAGMWELISKPGRDLIGRMLTRDTSARISADEVLRHPWILFYTAQSLPMMPIKIKLKNQIGSTCRQIVAAREPKLGGNTIDNGSHSELLSSESYNSNDPDECVLIDALATAISHVRISEPKRSRLCSPTGPIVQQGSSNMKASNLCKAF 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04611 483 FunFam Serine/threonine-protein kinase PEPKR2 116 438 - -
Trre5g04611 483 Gene3D Transferase(Phosphotransferase) domain 1 116 435 - -
Trre5g04611 483 ProSiteProfiles Protein kinase domain profile. 125 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g04611 483 Pfam Protein kinase domain 125 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g04611 483 ProSitePatterns Protein kinases ATP-binding region signature. 131 154 IPR017441 GO:0005524
Trre5g04611 483 PANTHER SERINE/THREONINE-PROTEIN KINASE 111 387 - -
Trre5g04611 483 CDD STKc_CAMK 124 372 - -
Trre5g04611 483 SUPERFAMILY Protein kinase-like (PK-like) 117 390 IPR011009 -
Trre5g04611 483 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Trre5g04611 483 SMART serkin_6 125 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04611 Trre-Chr5 48121542 48128046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04611 120 373 EF-hand Containing Proteins AT4G35310 44.318 2.84e-77 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trre5g04611 Pkinase 1.3e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04611 - - gmx:100812729 717.613