LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre5g04597	ATGGCGGAGCAACCACTTCCGATCGAGAATCCAGCAATTCCAATTGTTGAAGAAGAAGACGACGGCGACGAGGACTACACTGGCGGTGATGAAACTATGGATGAATTGGAAGAGGAAACACCAAATGTCAATTCAGTGATTGTTCCAGCTGGTGCGAATCACGCCGACGTCGTTTTGCCTCCAACGCGTACTGGTGAACTCACTCTTTCTTTTGAAGGCCAGGTTTACGTCTTCCACGATGTCACACCTCAGAAGGTTCAAGCTGTTTTGCTGCTTTTGGGAGGACGAGATGCACCGGCAGGCAGGCCTAAAGTTGAACAACCATTTGATCAAAGTATCAAGAGCATGGGCGATATTGCAAGGCATCCAAAGCTTTCACAAAGAATAGCCTCCTTGGTCAGGTATCGCGAAAAACGCAAGGATAGATGTTTTGAAAAGAAAATTAGATACACCGTGAGAAAAGAAGTGGCAGAAAGGATGCATCGGGAAAAGGGGCATTTTGCATCCTTGAAGCAAAGTCCTGGTTCCTCTGGTTCGTGTGCCGGTCAAGATGGCCTTCCAAATCCTGAATCTTTACGTAAATGTACACATTGTGGAGTCAGTGAAAAGGGTACTCCTGCAATGCGTCGTGGGCCAGCTGGACCAAGAACTTTATGTAATGCATGCGGCCTCATGTGGGCCAACAAGGGGACACTCAGAGATCTCAGGAAGGGGGGAAGAAATCTTTCTGTTGAGCAAAGTGGTCTGGACCGTTCTATTGATGTCAAGCCTACTGTTCTTGAAGGGGAATTGTCTCTCATTGAAAATGAACAAGGTATTTTGGAAAACCCTTCCAAGGTCATTGCTGTTGAAGGTTCAAATAATCATGCATTAAATCCAAGTGATGAGGAGTTGCCTGAATCTGCAGAACACCTTACAAACACACTGCCATTGGTAATTGATCATTCTTCGGAAAATGAACAGGAACCCTTGGTTGAGCTTTCGAATCCTTCGGATACAGGAACGTCTAATCCTTCAGATACAGATGTTGACATTCCCTGA	1041	0.4582	MAEQPLPIENPAIPIVEEEDDGDEDYTGGDETMDELEEETPNVNSVIVPAGANHADVVLPPTRTGELTLSFEGQVYVFHDVTPQKVQAVLLLLGGRDAPAGRPKVEQPFDQSIKSMGDIARHPKLSQRIASLVRYREKRKDRCFEKKIRYTVRKEVAERMHREKGHFASLKQSPGSSGSCAGQDGLPNPESLRKCTHCGVSEKGTPAMRRGPAGPRTLCNACGLMWANKGTLRDLRKGGRNLSVEQSGLDRSIDVKPTVLEGELSLIENEQGILENPSKVIAVEGSNNHALNPSDEELPESAEHLTNTLPLVIDHSSENEQEPLVELSNPSDTGTSNPSDTDVDIP	346

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre5g04597	346	MobiDBLite	consensus disorder prediction	14	31	-	-
	Trre5g04597	346	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	190	237	-	-
	Trre5g04597	346	MobiDBLite	consensus disorder prediction	170	184	-	-
	Trre5g04597	346	MobiDBLite	consensus disorder prediction	309	346	-	-
	Trre5g04597	346	SMART	tify_2	60	95	IPR010399	-
	Trre5g04597	346	ProSiteProfiles	CCT domain profile.	128	170	IPR010402	GO:0005515
	Trre5g04597	346	PANTHER	GATA TRANSCRIPTION FACTOR 28	18	335	IPR045280	GO:0006355
	Trre5g04597	346	ProSitePatterns	GATA-type zinc finger domain.	195	222	IPR000679	GO:0006355\|GO:0043565
	Trre5g04597	346	ProSiteProfiles	GATA-type zinc finger domain profile.	189	235	IPR000679	GO:0006355\|GO:0043565
	Trre5g04597	346	Gene3D	-	189	247	IPR013088	GO:0006355\|GO:0008270
	Trre5g04597	346	ProSiteProfiles	Tify domain profile.	60	95	IPR010399	-
	Trre5g04597	346	Pfam	CCT motif	128	169	IPR010402	GO:0005515
	Trre5g04597	346	Pfam	GATA zinc finger	195	231	IPR000679	GO:0006355\|GO:0043565
	Trre5g04597	346	MobiDBLite	consensus disorder prediction	1	31	-	-
	Trre5g04597	346	SMART	GATA_3	189	242	IPR000679	GO:0006355\|GO:0043565
	Trre5g04597	346	MobiDBLite	consensus disorder prediction	322	346	-	-
	Trre5g04597	346	Pfam	tify domain	65	94	IPR010399	-
	Trre5g04597	346	MobiDBLite	consensus disorder prediction	165	185	-	-
	Trre5g04597	346	CDD	ZnF_GATA	194	238	IPR000679	GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre5g04597	Trre-Chr5	47864551	47876849	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre5g04597	53	237	Tify Gene Family	AT1G51600	55.330	2.10e-61	197

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-GATA	Trre5g04597		CCT	7e-15	CL0281

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre5g04597	-		-	gmx:100801328	432.565