Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04596 ATGTACAACTCTATGAACATGTCCGATCAGATCAAGAACAACGACGAAACCGACAACAACAATCACATCCATTACGATTCACATAATCTTGAAGACGCTTCTGGTGGTGAAGGTGAAGGAAATATTCAAGATGTTTCACTCGATGATGTTTATGTTTCCGGTGATGGAAATCACCCTGATATGTCAATTCAACGATTTGATGATTCTTCTCAGCTCACGCTTTCTTTTCGTGGCCAAGTTTATGTCTTCGATTCTGTTACCCCTGAAAAAGTTCAATCGGTTTTGTTACTGTTAGGAGGATGTGAATTATCTTCGGGTTCACAATGTTTAGATACATCACCTCTTAATCAAAGGAGTGGTACTGAATTTCCTACAAGATGTAGTCAGCCACAGCGAGCAGCGTCGTTGATTAGGTTTCGTCAGAAGAGGAAAGAGCGAAACTTTGATAAGAAAGTTAGATATGAAGTGCGTCAAGAAGTTGCACTAAGGATGCAACGTAGTAAGGGTCAATTTACGTCATCTAAGAAACAAGATGGAGCTAACAATTATGGCTCTGATCCAGAGTCAGGGCAGGATATGGTTCAAACAGAAACCTCATGCACGCACTGTGGAATCAGTTCAAAATCCACCCCTATGATGAGAAGGGGGCCATCTGGCCCAAGGACACTTTGTAATGCTTGTGGGCTGTTTTGGGCAAATAGGGGTACTCTGAGGGATCTATCTACTTCTAGGAGAAATCACGAGCAACACACTATTGTGCCACCTGAGCAGGGTACTATGAGGGATCTTTCTAATTCTAAGAGAAACCACGAACCGCACCCTCTTCCACCACCTGAGCAGGTTGGTGAGGGTAATGACTTGACCTGTGAGACTGCTCTTCCTGCGCATAACGATTCTGTTGATGATAAAACAGCTTTAGTATCCGATCAATGA 933 0.4298 MYNSMNMSDQIKNNDETDNNNHIHYDSHNLEDASGGEGEGNIQDVSLDDVYVSGDGNHPDMSIQRFDDSSQLTLSFRGQVYVFDSVTPEKVQSVLLLLGGCELSSGSQCLDTSPLNQRSGTEFPTRCSQPQRAASLIRFRQKRKERNFDKKVRYEVRQEVALRMQRSKGQFTSSKKQDGANNYGSDPESGQDMVQTETSCTHCGISSKSTPMMRRGPSGPRTLCNACGLFWANRGTLRDLSTSRRNHEQHTIVPPEQGTMRDLSNSKRNHEPHPLPPPEQVGEGNDLTCETALPAHNDSVDDKTALVSDQ 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04596 310 MobiDBLite consensus disorder prediction 1 42 - -
Trre5g04596 310 ProSiteProfiles Tify domain profile. 65 100 IPR010399 -
Trre5g04596 310 PANTHER GATA TRANSCRIPTION FACTOR 28 13 288 IPR045280 GO:0006355
Trre5g04596 310 MobiDBLite consensus disorder prediction 166 195 - -
Trre5g04596 310 SMART GATA_3 194 247 IPR000679 GO:0006355|GO:0043565
Trre5g04596 310 Pfam GATA zinc finger 200 236 IPR000679 GO:0006355|GO:0043565
Trre5g04596 310 ProSitePatterns GATA-type zinc finger domain. 200 227 IPR000679 GO:0006355|GO:0043565
Trre5g04596 310 SMART tify_2 65 100 IPR010399 -
Trre5g04596 310 ProSiteProfiles CCT domain profile. 132 174 IPR010402 GO:0005515
Trre5g04596 310 CDD ZnF_GATA 199 241 IPR000679 GO:0006355|GO:0043565
Trre5g04596 310 MobiDBLite consensus disorder prediction 241 310 - -
Trre5g04596 310 Pfam tify domain 69 99 IPR010399 -
Trre5g04596 310 Pfam CCT motif 132 174 IPR010402 GO:0005515
Trre5g04596 310 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 197 255 - -
Trre5g04596 310 ProSiteProfiles GATA-type zinc finger domain profile. 194 250 IPR000679 GO:0006355|GO:0043565
Trre5g04596 310 MobiDBLite consensus disorder prediction 15 33 - -
Trre5g04596 310 Gene3D - 191 251 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04596 Trre-Chr5 47856258 47861365 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04596 69 308 Tify Gene Family AT4G24470 55.372 5.72e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre5g04596 CCT 9.1e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04596 - - lja:Lj0g3v0164269.1 340.502