LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre5g04594	ATGGCGGAGCAACCACTTCCGATCGAGAATCCAGCAATTCCAATTGCTGAAGAAGAAGACGACGGCGACTACACTGGCGGTGATGAAACTATGGATGAATTGGAAGAGGAAACACCAAACTATGGTGCGAATCACGCCGACGTCGTTTTGCCTCCAACGCGTACTGGTGAACTCACTCTTTCTTTTGAAGGCCAGGTTTATGTCTTCCACGATGTCACACCTCAGAAGGTTCAAGCTGTTTTGCTGCTTTTGGGAGGACGAGATGCACCGGCAGGCAGGCCTAAAGTTGAACAACCATTTGATCAAAGTATCAAGAGCATGGGCGATATTGCAAGGCATCCAACGCTTTCACAAAGAATAGCCTCCTTGCTCAGGTATCGCGGAAAACGCAACGATAGATGTTTTGAAAAGAAAATTAGATACAACGTGAGAAAAGAAGTGGCAAAAAGGATGCATCGGGAAAAAGGGCATTTTGCATCCTTGAAGCAAAGTCCTGGTTCCTCTGGTTCGTGTGCTGGTCAAGATGGCACTCCAAATCCTGAATCTTTACGTAAATGCACACATTGTGGAGTCAGCGAAAAGGATACTCCTGCAATGCGTCGTGGGCCAGCTGGACCAAAAACTTTATGTAATGCATGCGGCCTCATGTGGGCCAACAAGGGGACACTCAGAGATCTCAGGAAGGGGGGAAGAAATCTTTCTGTTGAGCAAAGTGGTCTGGACCGTTCTATTGATGTCAAGCCTACTGTTCTTGAAGGGGAATTGTCTGTCATTGAAAATGAACAAGGTATTTTGGAAAACCCTTCCAAGGCCGTTGCTGTTGAAGGTTCAAATAATCATGCATTAAATCCAAGTGATGAGGAGTTGCCTGAATCTGCAGAACACCTTACAAACACACTGCCATTGGTAATTGATCATTCTTCGGAAAATGAACAGGAACCCCTGGTTGAGCTTTCGAATCCTTCAGATACAGGAACGTCTAATCCTTCAGATACAGATGTTGACATTCCTGGAAACTTTGATTAG	1026	0.4552	MAEQPLPIENPAIPIAEEEDDGDYTGGDETMDELEEETPNYGANHADVVLPPTRTGELTLSFEGQVYVFHDVTPQKVQAVLLLLGGRDAPAGRPKVEQPFDQSIKSMGDIARHPTLSQRIASLLRYRGKRNDRCFEKKIRYNVRKEVAKRMHREKGHFASLKQSPGSSGSCAGQDGTPNPESLRKCTHCGVSEKDTPAMRRGPAGPKTLCNACGLMWANKGTLRDLRKGGRNLSVEQSGLDRSIDVKPTVLEGELSVIENEQGILENPSKAVAVEGSNNHALNPSDEELPESAEHLTNTLPLVIDHSSENEQEPLVELSNPSDTGTSNPSDTDVDIPGNFD	341

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre5g04594	341	MobiDBLite	consensus disorder prediction	14	36	-	-
	Trre5g04594	341	ProSiteProfiles	GATA-type zinc finger domain profile.	180	226	IPR000679	GO:0006355\|GO:0043565
	Trre5g04594	341	PANTHER	GATA TRANSCRIPTION FACTOR 28	18	326	IPR045280	GO:0006355
	Trre5g04594	341	CDD	ZnF_GATA	185	229	IPR000679	GO:0006355\|GO:0043565
	Trre5g04594	341	ProSiteProfiles	Tify domain profile.	51	86	IPR010399	-
	Trre5g04594	341	MobiDBLite	consensus disorder prediction	155	184	-	-
	Trre5g04594	341	Gene3D	-	179	238	IPR013088	GO:0006355\|GO:0008270
	Trre5g04594	341	Pfam	CCT motif	119	160	IPR010402	GO:0005515
	Trre5g04594	341	ProSitePatterns	GATA-type zinc finger domain.	186	213	IPR000679	GO:0006355\|GO:0043565
	Trre5g04594	341	SMART	GATA_3	180	233	IPR000679	GO:0006355\|GO:0043565
	Trre5g04594	341	MobiDBLite	consensus disorder prediction	1	46	-	-
	Trre5g04594	341	Pfam	GATA zinc finger	186	222	IPR000679	GO:0006355\|GO:0043565
	Trre5g04594	341	ProSiteProfiles	CCT domain profile.	119	161	IPR010402	GO:0005515
	Trre5g04594	341	MobiDBLite	consensus disorder prediction	313	334	-	-
	Trre5g04594	341	MobiDBLite	consensus disorder prediction	277	341	-	-
	Trre5g04594	341	MobiDBLite	consensus disorder prediction	161	181	-	-
	Trre5g04594	341	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	180	228	-	-
	Trre5g04594	341	Pfam	tify domain	56	85	IPR010399	-
	Trre5g04594	341	SMART	tify_2	51	86	IPR010399	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre5g04594	Trre-Chr5	47823530	47829819	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre5g04594	8	228	Tify Gene Family	AT1G51600	48.291	5.02e-61	196

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-GATA	Trre5g04594		CCT	5.9e-14	CL0281

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre5g04594	-		-	gmx:100801328	428.328