Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04589 ATGCCTCATAGAGCAACTTATATTTTCCCGCGTCATTTTCCAGAGCGAGGATTGGATGAATCATCCAAAAAGCTATTAGATCACGATAAGGACAATATCGTCAATTCAATCAAATCTGGAAGTGAAAGTGACACGCAAACCAAAAAGTCACTTTCGTTTTCTACTCCTCCAACAACTAAACACAACAACGACGTCGTTTTCTCCTCCGGCAAACACTCACATTCCTCCGGCGATAACAAGCTCCGATTCAAACAAAAGCAAATAACGGCTTTCTGCGATTGGTTTATCGACAAAAAAAGAAATCACTCCGGTCATCATAATTATCATCACTTCCGCCGCCGATCGTCAATCTCCGACGATGATCATGACTTTAATCTTTCTCAGCCGGAGACAGCCGTTAAAGACACTGCAATCGACCGGAATTTCGATCGGCAGGTTTCGCTTCCGAGGTTATCAAGCGATAGTAGCTATGCAGGGAGTTTGTTTTCCAGTGACATCAAAGAGGAAACGCCGTTGTCTCAAGTCTCCACCATTACCACCGCTAGGCAGAAAGAGGAGGAAGAAAACAAAGACGCGTTGGTTAAGAAGTGTAAAGAAAGCTACATCTTGCAGCTTATGTTAGCGAAGAGGTTGGCTTCTTTAGCAAGTCTTGTAACGGAACCGTTTCTCACTCATGGCACCGAAACTTGGGATGCTGAATCTGTTTCTTATCGTCTTTGGGTGAGTGGGTGTTTGTCGTATACAGACAAGATAACTGATGGATTTTACAACATATTGGGGATGAATCCATATCTGTGGGTGATGTGCAATGATGAGGAGGAAGGAAAGAGGATGCCTACTTTGATGGCACTTAAAGCCATTGAACCAGGCGAAACATCTATGGAGGTGGTGCTTGTTGATAGAGACGGAGATTCTCGTTTAAAGATGCTTCATGATAAAGCTCAGGAGTTGTATTGTTCTTTTGGGGACACCTTGGTGTTTGTCGAACAACTAGGAAAACTTGTTGCCATACATATGGGAGGTATATTCCCGGTGGAGGAAGGAGATCTCCACAAACGCTGGAAGTTGGTTAGTAAGAGGTTGAGAAATTTTCACCAATGTGTTGTGCTTCCCATTGGTAGTCTATCTGCAGGGCTTTGTAGGCATCGAGCAATTCTCTTCAAGAGGTTGGCTGATTACATAGGTTTGCCTTGTCGCATAGCTCGTGGTTGCAAGTATTGCGCTGCAGATCACAGATCCTCTTGCCTAGTTAAGATTAAAGATGACAAGCAGCTTTTGAGGGAATACGTAGTCGACCTTGTTGGGGAACCAGGAAATGTACATGGTCCAGATTCCTCGATCAATGGAGCATATGCTTCTTCGTTTCCTTCGCCGTTACAAATTTCTCATTTTATGGAATTACAATCACCCTATATGGATGATGATGAAAATTCTCAACCACTTATTAGTTTCGACCAAAGATCTTTTAATCCTGAAACTCATCCTTATTCAGGTTGTGGACAGAATGATCAACAAGTTATGGAAGCTGATTTGTCGAAAGGTCATCAGGGCTCCGTCTGTGCTTCTGTTGATCAAACCTGTGAAATAACCAAACCAAATCTAATTCCTTTTGGTTTAAAAGAGAATGATGAGGAATGTGCGGTTCTAGGTTCAATTTTGCCTACCATTCATGAGAATGTTGCTAAAGTTTTTCCTGCCACTGAATCATCATTACATGAATATCCAAGGTTTAGTGAAGATACAGTTATGGTACAAGAAGCTTCCAACAATGAGATCATCGTAACCGGTGGTTCTGTAGTAAAAAGTATTTTCAAGCAATGTATACTTAGTTCCTCCTGCCAATCAGAATTCAAGCAGGTAGACAATAGAATTGAAAATCAGGACTATTTACCTGATGGGAGTATTCCAAGATATGTGAATCTTGAACCATCGCTTGCAATGGACTGGCTTGAGATATCATGGGATGATTTACGGATTAAAGAGCGTGTTGGTGCTGGCTCATTTGGGACTGTGCACCGTGCTGAATGGCATGGATCAGATGTTGCAGTCAAAGTTTTAACAGTTCAGGATTTCCATGATGATCAATTGAAGGAGTTTTTGAGAGAGGTTGCAATAATGAAACGTGTTCGCCATCCAAATGTGGTGCTCTTCATGGGTGCAGTTACAACAAGCCCAAATCTATCAATAGTTACAGAGTATTTGCCGAGGGGTAGTTTATACCGCCTGATACATAGGCCAGCATCTGGTGAAATTCTGGATAGTAGGAGAAGATTACGGATGGCTTTGGATGTGGCTAAAGGAATGAATTATCTCCATTGTCTGAAACCTCCAATCGTGCACTGGGATCTCAAATCACCAAACTTGTTAGTGGACAAAAATTGGACTGTGAAGGTTTGTGATTTTGGATTGTCCAGATTTAAGGCAAACACTTTCATACCCTCAAAATCTGTTGCCGGAACACCCGAGTGGATGGCCCCAGAATTTCTTCGCGGAGAACCTTCGGATGAGAAATCAGACGTATTCAGTTTTGGAGTTATCTTGTGGGAGCTTGTGACCATGCAACAACCATGGAGTGGACTTAACCCTCCCCAGGTGGTCGGAGCTGTTGCTTTCCAGAATAGGAAGCTTGCTATCCCTCCAAACATCTCCCCAGCATTGGCCTCCCTCATGGAATCTTGTTGGGCTAACGATCCTGCTCAGCGCCCATCTTTCAGTAGCATAATTGAGTCATTAAAGAAGCTGTTGAAGTCTCCAGCAGAGGTGATAAAAATGGGTGATACGCACAAGCCATAA 2793 0.4289 MPHRATYIFPRHFPERGLDESSKKLLDHDKDNIVNSIKSGSESDTQTKKSLSFSTPPTTKHNNDVVFSSGKHSHSSGDNKLRFKQKQITAFCDWFIDKKRNHSGHHNYHHFRRRSSISDDDHDFNLSQPETAVKDTAIDRNFDRQVSLPRLSSDSSYAGSLFSSDIKEETPLSQVSTITTARQKEEEENKDALVKKCKESYILQLMLAKRLASLASLVTEPFLTHGTETWDAESVSYRLWVSGCLSYTDKITDGFYNILGMNPYLWVMCNDEEEGKRMPTLMALKAIEPGETSMEVVLVDRDGDSRLKMLHDKAQELYCSFGDTLVFVEQLGKLVAIHMGGIFPVEEGDLHKRWKLVSKRLRNFHQCVVLPIGSLSAGLCRHRAILFKRLADYIGLPCRIARGCKYCAADHRSSCLVKIKDDKQLLREYVVDLVGEPGNVHGPDSSINGAYASSFPSPLQISHFMELQSPYMDDDENSQPLISFDQRSFNPETHPYSGCGQNDQQVMEADLSKGHQGSVCASVDQTCEITKPNLIPFGLKENDEECAVLGSILPTIHENVAKVFPATESSLHEYPRFSEDTVMVQEASNNEIIVTGGSVVKSIFKQCILSSSCQSEFKQVDNRIENQDYLPDGSIPRYVNLEPSLAMDWLEISWDDLRIKERVGAGSFGTVHRAEWHGSDVAVKVLTVQDFHDDQLKEFLREVAIMKRVRHPNVVLFMGAVTTSPNLSIVTEYLPRGSLYRLIHRPASGEILDSRRRLRMALDVAKGMNYLHCLKPPIVHWDLKSPNLLVDKNWTVKVCDFGLSRFKANTFIPSKSVAGTPEWMAPEFLRGEPSDEKSDVFSFGVILWELVTMQQPWSGLNPPQVVGAVAFQNRKLAIPPNISPALASLMESCWANDPAQRPSFSSIIESLKKLLKSPAEVIKMGDTHKP 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04589 930 PRINTS Tyrosine kinase catalytic domain signature 882 904 IPR001245 GO:0004672|GO:0006468
Trre5g04589 930 PRINTS Tyrosine kinase catalytic domain signature 772 790 IPR001245 GO:0004672|GO:0006468
Trre5g04589 930 PRINTS Tyrosine kinase catalytic domain signature 731 744 IPR001245 GO:0004672|GO:0006468
Trre5g04589 930 PRINTS Tyrosine kinase catalytic domain signature 838 860 IPR001245 GO:0004672|GO:0006468
Trre5g04589 930 FunFam Serine/threonine-protein kinase CTR1 736 921 - -
Trre5g04589 930 Gene3D Phosphorylase Kinase; domain 1 650 734 - -
Trre5g04589 930 Pfam Protein tyrosine and serine/threonine kinase 657 911 IPR001245 GO:0004672|GO:0006468
Trre5g04589 930 CDD STKc_MAP3K-like 663 911 - -
Trre5g04589 930 SUPERFAMILY Protein kinase-like (PK-like) 632 910 IPR011009 -
Trre5g04589 930 Pfam Ethylene-responsive protein kinase Le-CTR1 232 440 - -
Trre5g04589 930 MobiDBLite consensus disorder prediction 34 78 - -
Trre5g04589 930 ProSiteProfiles Protein kinase domain profile. 657 915 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g04589 930 SMART serkin_6 657 915 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g04589 930 ProSitePatterns Protein kinases ATP-binding region signature. 663 684 IPR017441 GO:0005524
Trre5g04589 930 MobiDBLite consensus disorder prediction 36 74 - -
Trre5g04589 930 Gene3D Transferase(Phosphotransferase) domain 1 736 923 - -
Trre5g04589 930 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 206 916 - -
Trre5g04589 930 ProSitePatterns Serine/Threonine protein kinases active-site signature. 778 790 IPR008271 GO:0004672|GO:0006468
Trre5g04589 930 FunFam Serine/threonine-protein kinase isoform 1 647 735 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04589 Trre-Chr5 47753245 47759730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04589 1 925 MAP Kinase Kinase Kinase AT4G24480 54.049 0.0 1011
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Trre5g04589 PK_Tyr_Ser-Thr 1.1e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04589 - - gmx:100808435 1394.41