Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04582 ATGCTAGAAAACAAGCCGAAGAAACTTACCTTCTCTGAAATCGACGCTGCTACTCTCACACAACGGTATGATGCAGCGACTGTGTTGACGGTGCTTCAGGAATTAACACATTACACTGAGTCAAAGTTTGATTGGAATGAATTGGTTAAGAAAACTACTTCTGGTATTTCTAATGCCAGAGAATATCAGATGCTATGGCGTCACTTGGCGTATCGATATAACTTGCCTGAGAATTTGGATGAAGAAGGGGATGATCCTATGGATGATGATAGTGACATAGATTGCGAGCTGGAATCATTTCCTCCTACAAGTGGGGAATCTACATTAGAGCCCTCAGCATGTGTGAAGGTGATTATTGCTTCCCGTACGCTTAGTGAGGCTACCCCTAGTAGCTCAACAATTGAGGCTCCACTGACTGTAAATTTTCCAGTTTGCCGTTCATCTAGAACTCCAAAGGAAATTTTACTGCCCTCTAATTTGATGGAACAGACAAGCATTATGTTTCCGGTTTTTGTTAATAGACAGACACTTCCAACTGTATCTTCAACAGATGCTTTAGAAACCAAGGGAACAGTTGGTGGCACCATGGCTTCCAAAAGGAAAAGAAAAGGATGGTCAGAGGAAGAGGACAATGAGCTACGTGCTGCTGTTCAGAGATGGGGTGAAGGGAACTGGGCAACCATGGCAAAAGGAGACCACTTTTCTATTAAGAGAACCGCAACACAATTATCTCAGAGGTGGAGTGCATTACGAAAGAAAGACGGCAGTGCCAATTCAAGTGCCAATCCAGTAACCCCCCCCGTGACCACCAACACGCAGTATACTGCTGAACAGTTGGCAACTCGTCACTCCTTAAATTTAGCTCTTGATATGCCATTCAAAAAGTTAACTGCTCCTGGAATGACTGATCCTGGCAGGACATCCACATCAATTAAAAATCAAGTGCAGAGTCGTAAAACAACGCAAGTCTCCACAGTTCGTAGTTCTGTACCACCTCAGGCGCAAGTCTCCACAGTTCGTAGTTCTGTACCACCTCAGGCGCAAGTCTCCACTGTTCGCAGTTCTGTACCACCTCAGACGCAAGTCTCCACAGTTCGCAGTTCTGTACCACCTCAGACGCAAGTCTCCACAGTTCGCAGTTCAGTACCACCTCAGACGCAAGTCTCCAACGTTCGCAGTTCAGTACCAACTCAGACGCAAGTCTCCAACGTTCGCAGTTCGGTACCACCTCAGGCGCAAGTCTCCACAGTTCGCAGTTCGGTACCACCTCAGGCACAAGTCTCCACAGTTCGCAGTTCTGTACCACCTCAGGCACAAATCTCCACAGTTCGCAGTTCCGTACCTCCTCAGGCGCAAGTCTCCACAGTTCGCAGTTCCGTACCACCTCAGGCGCAAATCTCCACAGTTCGCAGTTCTGTACCACCTCAGGCGCAAATCTCCACAGTTCGCAGTTCTGTACCACCGCAGATGCAAGTTTCCACAGTTCGCAGTTCTGTACCACCTCAGACACAAATCTCTACAGCTCGCGGTTCTGTATAG 1539 0.4743 MLENKPKKLTFSEIDAATLTQRYDAATVLTVLQELTHYTESKFDWNELVKKTTSGISNAREYQMLWRHLAYRYNLPENLDEEGDDPMDDDSDIDCELESFPPTSGESTLEPSACVKVIIASRTLSEATPSSSTIEAPLTVNFPVCRSSRTPKEILLPSNLMEQTSIMFPVFVNRQTLPTVSSTDALETKGTVGGTMASKRKRKGWSEEEDNELRAAVQRWGEGNWATMAKGDHFSIKRTATQLSQRWSALRKKDGSANSSANPVTPPVTTNTQYTAEQLATRHSLNLALDMPFKKLTAPGMTDPGRTSTSIKNQVQSRKTTQVSTVRSSVPPQAQVSTVRSSVPPQAQVSTVRSSVPPQTQVSTVRSSVPPQTQVSTVRSSVPPQTQVSNVRSSVPTQTQVSNVRSSVPPQAQVSTVRSSVPPQAQVSTVRSSVPPQAQISTVRSSVPPQAQVSTVRSSVPPQAQISTVRSSVPPQAQISTVRSSVPPQMQVSTVRSSVPPQTQISTARGSV 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04582 512 SMART sant 201 253 IPR001005 -
Trre5g04582 512 SUPERFAMILY Homeodomain-like 200 253 IPR009057 -
Trre5g04582 512 Gene3D - 195 258 - -
Trre5g04582 512 MobiDBLite consensus disorder prediction 186 207 - -
Trre5g04582 512 CDD SANT_TRF 205 252 - -
Trre5g04582 512 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 3 505 - -
Trre5g04582 512 Pfam Myb-like DNA-binding domain 202 247 IPR001005 -
Trre5g04582 512 MobiDBLite consensus disorder prediction 302 477 - -
Trre5g04582 512 ProSiteProfiles Myb-like domain profile. 197 251 IPR001005 -
Trre5g04582 512 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 197 255 IPR017930 -
Trre5g04582 512 MobiDBLite consensus disorder prediction 296 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04582 Trre-Chr5 47673787 47678631 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre5g04582 Myb_DNA-binding 2.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04582 - - tpra:123913998 891.338
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04582 5 47673787 47678631 Trre5g04582 5 47673787 47678631 ECH