Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04573 ATGAACTTGTGCTTCAAGTCTTCAATTTCAACAATGGTGTATCCAGGTTCAATGCAATTTTCTCCTGACGTTAGGCTCAAAACTAATAATAATGGACCTCGTAGTTTCCAGCATCATAATCCGGCGCTTATTGGTCGATTACATTTAGTCACCATGAATCTTTTACCGCGTACTTTGAAGCGAGATTCTTTGGCACTCCATTTTCTGAGTGGAGTACATGCTCCAATAAGGCACACACCTTCCAGATGCGGTGTTTTTGTATGTCGGTCTGCCATGCTACCGGGTGGAGGGAATGGGACTGCCCTTGTGAAATCTGCTAGTGTTTTTTTAACAAGGTCATATGATTCTTTACTTGGAAACCCTATTTTCCTTCGATTGATTCCAGCCCTTGGTATTATTGCCTTTGCTGTTTATGGTATTGAGCCACTCCTTCGTCTCAGCAGGATTCTATTTTTTCAAAGGCCTGATAGTAGTTGGAAGAAAAGTAGTTCGCGATATGTTATGACATCTTATTTTCAGCCATTATTATTGTGGACTGGGGCAATGCTCATTTGCAGGGCATTAGATCCAATTGTCCTGCCATCTCAGACTAGCCAGGTCGTGAAGCAACGACTGCTCAATTTTGTGAGATCTTTGTCAACAGTGATTTCATTTGCTTACTGTTTATCAAGCTTGATTCAACAAGCTCAAAAATTCTTTATGGAGGCAACTGATTCAAGTGATACAAGAAATATGGGCCTTGATTTTGCTGGGAAGGCAATATACACTGCTGTATGGGTTGCTGCGGTGTCATTGTTCATGGAGTTGCTAGGTTTCTCCACACAGAAGTGGTTAACTGCTGGAGGTTTGGGCACAGTATTGCTCACTCTTGCCGGTCGTGAGATATTTACGAACTTCTTGTCAAGTATAATGATCCACGCAACTCGGCCATTTGTATTGAATGAGTGGATTCAAACAAAGATTGAAGGATATGAGGTTTCTGGTACAGTCGAGCATGTGGGCTGGTGGTCGCCAACCATTATTAGAGGTGATGATCGTGAGGCAGTTCATATTCCTAATCACAAGTTCACCGTCAATGTTGTAAGAAATTTGACTCAGAAATCTCATTGGCGCATCAAGAGTTACATTTCAATTAGTCACTTGGATGTTAACAAAATTAATAGTATTGTAGCTGATATGCGTAAGGTTTTGGCTAAAAATCCTCAAGTGGAGCAGCAGAGATTGCACAGAAGAGTCTTTTTGGAAGACATCACTCCTGAAAATCAAGCTCTAAAGATATTGATATCTTGCTTTGTGAAAACTTCACATTTTGAGGAGTACCTCTGTGTTAAGGAGGCAATCCTTTTGGATCTTCTCAGAGTTGTGAGTCATCATCGAGCCCGATTAGCCACTCCCATCCGCACTTTTCAGAAAGTATACAGTGAGCCTGCCTCGGAAAATATTCCTTTTGGGGATACCATTTTCACTCGATCTAGAGCAGCAGTAAATCGCCCATTACTGATAGAACCACAATATAAAGTTAACGGTGAAGATAAAGTTAAGCCATCAACTCGTTCAACTCGTGCAAATGAGGAAAAAGATGCCAAGATTGATGAAACTGCAGCATCTGATTCCAAAGGTGATGACAATTTGGCAGCAACATCAACCTCTCCACCCGGTGTAAACTTCAAAGATAAATCCAAGTCAAGTTCTGATGCCCAAATCCAAAACACGGGTTCTGATAGTTCAGTGGAGAAGACCTCCAAAACCATGCAGCCTAAAAAAGAAAGTGCAGGGGATGTAGGAAAGGGAAGTACAACTCCTGCATCTAAAAATCTTGCTCAAAGTGCTGTTTCTGAAACTTCGCCCGTTACTTCCCATGAGTCTGGCAGGGGAGAGACTCTTTCTGCTACTTCTTCACAGTCAAAGCAAGATGAAGAGAAATCTTCAGTGCCGCCATCATCATTACGGCCTCCCTTAGAAGAGAATATTCTTCTTGGGGTTGCACTTGAAGGCTCAAAACGAACTCTTCCAATTGAGGAAGAAACGAGTCCATCTCCTAACTTGGCCGAGTCACAAGAGTTTGCTGTCCAACGGAATGGGAATGGACCTCCTGCTAACAAAGATAATGGTCCGATGTCTTCATTTCCAAATGCTAAGCAGAATGACTAG 2151 0.4217 MNLCFKSSISTMVYPGSMQFSPDVRLKTNNNGPRSFQHHNPALIGRLHLVTMNLLPRTLKRDSLALHFLSGVHAPIRHTPSRCGVFVCRSAMLPGGGNGTALVKSASVFLTRSYDSLLGNPIFLRLIPALGIIAFAVYGIEPLLRLSRILFFQRPDSSWKKSSSRYVMTSYFQPLLLWTGAMLICRALDPIVLPSQTSQVVKQRLLNFVRSLSTVISFAYCLSSLIQQAQKFFMEATDSSDTRNMGLDFAGKAIYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSIMIHATRPFVLNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLTQKSHWRIKSYISISHLDVNKINSIVADMRKVLAKNPQVEQQRLHRRVFLEDITPENQALKILISCFVKTSHFEEYLCVKEAILLDLLRVVSHHRARLATPIRTFQKVYSEPASENIPFGDTIFTRSRAAVNRPLLIEPQYKVNGEDKVKPSTRSTRANEEKDAKIDETAASDSKGDDNLAATSTSPPGVNFKDKSKSSSDAQIQNTGSDSSVEKTSKTMQPKKESAGDVGKGSTTPASKNLAQSAVSETSPVTSHESGRGETLSATSSQSKQDEEKSSVPPSSLRPPLEENILLGVALEGSKRTLPIEEETSPSPNLAESQEFAVQRNGNGPPANKDNGPMSSFPNAKQND 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04573 716 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 13 691 IPR045042 -
Trre5g04573 716 Pfam Mechanosensitive ion channel 252 459 IPR006685 GO:0016020|GO:0055085
Trre5g04573 716 MobiDBLite consensus disorder prediction 596 644 - -
Trre5g04573 716 Gene3D - 311 366 IPR023408 -
Trre5g04573 716 MobiDBLite consensus disorder prediction 672 716 - -
Trre5g04573 716 Gene3D - 205 309 - -
Trre5g04573 716 MobiDBLite consensus disorder prediction 506 716 - -
Trre5g04573 716 MobiDBLite consensus disorder prediction 507 538 - -
Trre5g04573 716 MobiDBLite consensus disorder prediction 540 580 - -
Trre5g04573 716 SUPERFAMILY Sm-like ribonucleoproteins 295 365 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04573 Trre-Chr5 47602881 47611094 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04573 38 690 Mechanosensitive Ion Channel Family AT1G58200 55.769 0.0 729
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04573 K22047 - gmx:100796022 1064.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g04573 5 47602881 47611094 Trre5g04573 5 47602881 47611094 ECH