Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04571 ATGGCGTATTCGGGATCAATTCGATTGTCTCATGTCATTAAGCAATACAGTAGTAATAATGGAAGTTGTAGTTTTTGTCATAAAATCAATTCTGGTAATCGATTATGTTTTGTCGCCTTCAATCATCCGCGGCATAGTTTGAGAATGGATTCTTCAGCACTCGTCTTTTCCAGATTACATGTCCAAATTAATCCGGTAGCTTCTAGATGTAACGTTTTGTTGTGCCGATCTGCTCTTGTACCCGCTGGAGGGTGTGAGGCTCCGCTGATGAAAGTGGCTACTGTTTCTTTGTCAAGGTCATATACTGCTATATCAGGAGGACCAATTGTGCTTCAATTGATCCCTGCCCTTGGTATCATTGGCTTTGCCGCCTTTGGTCTTGAACCTCTCATGCGGCTTTGCAGGGCTCTATTTCTCCAAGAATGGAACGATAAAAGTTGGAAGAAAAGTAATTCACGTTATATAATGACATCTTATTTTCAACCTTTGCTGCTGTGGACTGGGGTAATGCTCATCTGCAGGTGTTTAGATCCACTAGTCCTACAATCAGAAACACGTCCGGTTATAAAGCAAAGGCTGTTGAGTTTTGTTAGATCTTTTTCAACTGTGTTTACACTTGCTTATTGTTCTTCAAGCTTTGTTCGGCAAGCACAAAACTTCTATAAGGAGACAAATGACACCAATAATGAAAGAAAAGTTAGCATTGATCTTATCGGGAAAGCTGTATATACTGCAATATGGGTTGCTGCCGTGTCATTGTTCATGGAGTTGCTGGGTCTCTCCACACAGAAGTGGTTGACTGCTGGTGGTATGGGTACAGTATTGCTTTCGCTTGCAGGTCGTGAGATATTCACAAACTTCCTTTCAAGTATGATAATTCATGCAACTCGACCATTTGTTGTGAACGAGCGGATTAAAACAAAGATTAAAGGATATGAGGTTTCTGGTAGAGTTGAGCATGTAGGTTGGTGGTCACCAACAATAGTTAGAGGTGCTGATTGTGAAGCTGTTCACATTCCTAATCATAAATTGAGTGTAAATGTTGTGAGAAATCTTAGTAAGAAAACTCATTGGCGCATCAAAACTCACCTGGCTATTAGTCACTTGGATATTAACAAGATTAATATCATCATAGCTGATATGCGCAAGGTTTTGGCTAAAAATCCTTTAGTAGAGCAGAAAAAATTGCATAGACGAGTTTTTCTGGAGGATGTCAATCCAGAAAATCAGGCTCTTATGATATTAGTATCTTGCTTTGTTAAAACTTCACATTCCGAAGAGTACCTCCGTGTTAAGGAGGACATTCTCTTGGATCTTCTTAAAGTCATCGGTCATCATGGAGCTCGGCTAGCCACACCCATCCGCACAATTCAGAAGATGTACGGTGATCGTGATTTAGAAACTGATCCATTTGAAGATGCCATTTTCACTCGTTCCAACGCAAAGGGAAACCGCTCTATCCCATTCATAGATCCACCTTATAAAGTTAAGCCTTCAACTCAATCAATTATTGTAAACGGTGAAAAAGATGCCAAGATTCGTGAAACCTTTGTATCTGGTTTCAAAGACGAAGGTGAAAAAATTATCGCGACATGGACCCCTTCTTCCAGTGCAAAGCCCCAGGATAAATTCAAGTCATCATCTCAAACCAAGACTCAGAGTGTGGGTTCTGATAACTCTGTCCAAAAGGCCTCTAAATCGGGAAAAACACCCCAAATTTTGTCATCATCCAATGAAACTTCACCGTCAAAGAAAGATGAAGAAAAATGA 1770 0.4034 MAYSGSIRLSHVIKQYSSNNGSCSFCHKINSGNRLCFVAFNHPRHSLRMDSSALVFSRLHVQINPVASRCNVLLCRSALVPAGGCEAPLMKVATVSLSRSYTAISGGPIVLQLIPALGIIGFAAFGLEPLMRLCRALFLQEWNDKSWKKSNSRYIMTSYFQPLLLWTGVMLICRCLDPLVLQSETRPVIKQRLLSFVRSFSTVFTLAYCSSSFVRQAQNFYKETNDTNNERKVSIDLIGKAVYTAIWVAAVSLFMELLGLSTQKWLTAGGMGTVLLSLAGREIFTNFLSSMIIHATRPFVVNERIKTKIKGYEVSGRVEHVGWWSPTIVRGADCEAVHIPNHKLSVNVVRNLSKKTHWRIKTHLAISHLDINKINIIIADMRKVLAKNPLVEQKKLHRRVFLEDVNPENQALMILVSCFVKTSHSEEYLRVKEDILLDLLKVIGHHGARLATPIRTIQKMYGDRDLETDPFEDAIFTRSNAKGNRSIPFIDPPYKVKPSTQSIIVNGEKDAKIRETFVSGFKDEGEKIIATWTPSSSAKPQDKFKSSSQTKTQSVGSDNSVQKASKSGKTPQILSSSNETSPSKKDEEK 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04571 589 Gene3D - 298 351 IPR023408 -
Trre5g04571 589 MobiDBLite consensus disorder prediction 532 589 - -
Trre5g04571 589 Pfam Mechanosensitive ion channel 240 449 IPR006685 GO:0016020|GO:0055085
Trre5g04571 589 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 584 IPR045042 -
Trre5g04571 589 MobiDBLite consensus disorder prediction 532 580 - -
Trre5g04571 589 SUPERFAMILY Sm-like ribonucleoproteins 283 353 IPR010920 -
Trre5g04571 589 Gene3D - 192 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04571 Trre-Chr5 47588080 47592951 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04571 1 502 Mechanosensitive Ion Channel Family AT1G58200 56.859 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04571 K22047 - mtr:11434686 994.956