Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g04570 ATGCTGCATGATCTTATACTTCAGTTAAATTCAACTATGGCGTATTCGGGATCAATTCGATTGTCTCATGTCATTAAGCAATACAGTAGTAATAATGGAAGTTGTAGTTTTTGTCATAAAATCAATTCTGGTAATCGATTATGTTTTGTCGCCTTCAATCATCCGCGGCATAGTTTGAGAATGGATTCTTCAGCACTCGTCTTTTCCAGATTACATGTCCAAATTAATCCGGTAGCTTCTAGATGTAACGTTTTGTTGTGCCGATCTGCTCTTGTACCCGCTGGAGGGTGTGAGGCTCCGCTGATGAAAGTGGCTACTGTTTCTTTGTCAAGGTCATATACTGCTATATCAGGAGGACCAATTGTGCTTCAATTGATCCCTGCCCTTGGTATCATTGGCTTTGCCGCCTTTGGTCTTGAACCTCTCATGCGGCTTTGCAGGGCTCTATTTCTCCAAGAATGGAACGATAAAAGTTGGAAGAAAAGTAATTCACGTTATATAATGACATCTTATTTTCAACCTTTGCTGCTGTGGACTGGGGTAATGCTCATCTGCAGGTGTTTAGATCCACTAGTCCTACAATCAGAAACACGTCCGGTTATAAAGCAAAGGCTGTTGAGTTTTGTTAGATCTTTTTCAACTGTGTTTACACTTGCTTATTGTTCTTCAAGCTTTGTTCGGCAAGCACAAAACTTCTATAAGGAGACAAATGACACCAATAATGAAAGAAAAGTTAGCATTGATCTTATCGGGAAAGCTGTATATACTGCAATATGGGTTGCTGCCGTGTCATTGTTCATGGAGTTGCTGGGTCTCTCCACACAGAAGTGGTTGACTGCTGGTGGTATGGGTACAGTATTGCTTTCGCTTGCAGGTCGTGAGATATTCACAAACTTCCTTTCAAGTATGATAATTCATGCAACTCGACCATTTGTTGTGAACGAGCGGATTAAAACAAAGATTAAAGGATATGAGGTTTCTGGTAGAGTTGAGCATGTAGGTTGGTGGTCACCAACAATAGTTAGAGGTGCTGATTGTGAAGCTGTTCACATTCCTAATCATAAATTGAGTGTAAATGTTGTGAGAAATCTTAGTAAGAAAACTCATTGGCGCATCAAAACTCACCTGGCTATTAGTCACTTGGATATTAACAAGATTAATATCATCATAGCTGATATGCGCAAGGTTTTGGCTAAAAATCCTTTAGTAGAGCAGAAAAAATTGCATAGACGAGTTTTTCTGGAGGATGTCAATCCAGAAAATCAGGCTCTTATGATATTAGTATCTTGCTTTGTTAAAACTTCACATTCCGAAGAGTACCTCCGTGTTAAGGAGGACATTCTCTTGGATCTTCTTAAAGTCATCGGTCATCATGGAGCTCGGCTAGCCACACCCATCCGCACAATTCAGAAGATGTACGGTGATCGTGATTTAGAAACTGATCCATTTGAAGATGCCATTTTCACTCGTTCCAACGCAAAGGGAAACCGCTCTATCCCATTCATAGATCCACCTTATAAAGTTAAGCCTTCAACTCAATCAATTATTGTAAACGGTGAAAAAGATGCCAAGATTCGTGAAACCTTTGTATCTGGTTTCAAAGACGAAGGTGAAAAAATTATCGCGACATGGACCCCTTCTTCCAGTGCAAAGCCCCAGGATAAATTCAAGTCATCATCTCAAACCAAGACTCAGAGTGTGGGTTCTGATAACTCTGTCCAAAAGGCCTCTAAATCGGGAAAAACACCCCAAATTTTGTCATCATCCAATGAAACTTCACCGTCAAAGAAAGATGAAGAAAAATGA 1806 0.4014 MLHDLILQLNSTMAYSGSIRLSHVIKQYSSNNGSCSFCHKINSGNRLCFVAFNHPRHSLRMDSSALVFSRLHVQINPVASRCNVLLCRSALVPAGGCEAPLMKVATVSLSRSYTAISGGPIVLQLIPALGIIGFAAFGLEPLMRLCRALFLQEWNDKSWKKSNSRYIMTSYFQPLLLWTGVMLICRCLDPLVLQSETRPVIKQRLLSFVRSFSTVFTLAYCSSSFVRQAQNFYKETNDTNNERKVSIDLIGKAVYTAIWVAAVSLFMELLGLSTQKWLTAGGMGTVLLSLAGREIFTNFLSSMIIHATRPFVVNERIKTKIKGYEVSGRVEHVGWWSPTIVRGADCEAVHIPNHKLSVNVVRNLSKKTHWRIKTHLAISHLDINKINIIIADMRKVLAKNPLVEQKKLHRRVFLEDVNPENQALMILVSCFVKTSHSEEYLRVKEDILLDLLKVIGHHGARLATPIRTIQKMYGDRDLETDPFEDAIFTRSNAKGNRSIPFIDPPYKVKPSTQSIIVNGEKDAKIRETFVSGFKDEGEKIIATWTPSSSAKPQDKFKSSSQTKTQSVGSDNSVQKASKSGKTPQILSSSNETSPSKKDEEK 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g04570 601 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 13 596 IPR045042 -
Trre5g04570 601 MobiDBLite consensus disorder prediction 544 601 - -
Trre5g04570 601 Gene3D - 202 309 - -
Trre5g04570 601 SUPERFAMILY Sm-like ribonucleoproteins 295 365 IPR010920 -
Trre5g04570 601 Pfam Mechanosensitive ion channel 252 461 IPR006685 GO:0016020|GO:0055085
Trre5g04570 601 MobiDBLite consensus disorder prediction 544 592 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g04570 Trre-Chr5 47588080 47592987 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g04570 13 514 Mechanosensitive Ion Channel Family AT1G58200 56.859 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g04570 K22047 - mtr:11434686 1017.68